PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782028
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 671aa    MW: 75303.2 Da    PI: 7.1911
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782028genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.3e-18565598134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  676782028 565 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 598
                ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121415.291159IPR002652Importin-alpha, importin-beta-binding domain
Gene3DG3DSA:1.25.10.101.1E-11911494IPR011989Armadillo-like helical
PfamPF017491.1E-181294IPR002652Importin-alpha, importin-beta-binding domain
SuperFamilySSF483714.99E-11312493IPR016024Armadillo-type fold
SMARTSM001853.2E-4107148IPR000225Armadillo
PfamPF005141.2E-6109148IPR000225Armadillo
CDDcd000201.55E-33112232No hitNo description
PROSITE profilePS501769.012118161IPR000225Armadillo
SMARTSM001854.9E-8150190IPR000225Armadillo
PfamPF005145.1E-10152189IPR000225Armadillo
PROSITE profilePS5017610.202161189IPR000225Armadillo
SMARTSM001850.0068192233IPR000225Armadillo
PfamPF005141.3E-8193232IPR000225Armadillo
SMARTSM0018516235274IPR000225Armadillo
CDDcd000208.65E-26246359No hitNo description
SMARTSM001853.2E-5276316IPR000225Armadillo
PfamPF005144.4E-7279315IPR000225Armadillo
SMARTSM001850.21318359IPR000225Armadillo
SMARTSM001851.5E-4361401IPR000225Armadillo
PfamPF005142.2E-6363400IPR000225Armadillo
CDDcd000202.70E-18368493No hitNo description
SMARTSM001850.0098404444IPR000225Armadillo
PfamPF161861.1E-18456502IPR032413Atypical Arm repeat
SMARTSM004018.0E-14559610IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.835559595IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-11561598No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14563598IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.42E-12564600No hitNo description
PROSITE patternPS003440565590IPR000679Zinc finger, GATA-type
PfamPF003205.9E-16565598IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006606Biological Processprotein import into nucleus
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0008565Molecular Functionprotein transporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MSLRPNEKTE VRRNRYKVGV DSEESRRRRE NFLVEIRKSK REESLMKKRR HGSQAPQDSN  60
LDPTVSSVGQ STFTDMDLLT MVSRIWSDDP SWQLGSAYMF RLLLCSENPP SDKVIESGVV  120
PRFVEFLEKE DFPWLQFEAA WVLTNIASGT RQHTKVVIDH GAIPVFIKLL ASPIDDIREQ  180
AVWALGNVAG DSTQCRDYVL SCGALEPLLA QLNEHSELSM LRTATWTLSN FCCGKPPPAF  240
RQVKLVIHAL KRLIHSSDVF VLKDACWALS HLSEGREEEI QNVIEADVVP RLVELLLHPS  300
PIVLTPALRT IGNLVTVNIE QIQCVINCGA LTNLANLLTQ NCKKVPKKEA CWTVSNITAG  360
TKVQIQSVID ANLIPILVHL AQNAEFDIKR EALFAISNAT RCGSHDQIKY LVEQSCIKPL  420
CDILVCPQLE IIYVCLDGLE NILKAGEAEK NTGYMNYFQL IEDAEGLEKI ENLQRNDNKE  480
IYEKAVKILE TYWVVEEDED TKTTCRLPIT APTSISNHSI SSSEEMLDHS DKVSMDTETT  540
KRRGEDVMEE NKRSSSSCSN EKKTCADCGT SKTPLWRGGP AGPKSLCNAC GIRNRKKRRG  600
VDDKKQLKKS NSVCGGGDLR RNPKFGESLK QRMMDFGMGK RSTVEKQRRK LGEEEQAAVL  660
LMALSYGSVY A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4b8j_A0.015123511IMPORTIN SUBUNIT ALPHA-1A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to conventional NLS motifs with high affinity in the absence of an importin beta subunit. Mediates nuclear protein import across the nuclear envelope in vitro in the absence of exogenously added importin beta subunit (PubMed:10428841). Acts as cellular receptor for the nuclear import of the virD2 protein of Agrobacterium, but is not essential for Agrobacterium-mediated root transformation (PubMed:18836040). {ECO:0000269|PubMed:10428841, ECO:0000269|PubMed:18836040}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444089.10.0PREDICTED: importin subunit alpha-1
SwissprotQ963210.0IMPA1_ARATH; Importin subunit alpha-1
TrEMBLA0A4P1RU740.0A0A4P1RU74_LUPAN; Uncharacterized protein
STRINGXP_010444089.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-63GATA transcription factor 16
Publications ? help Back to Top
  1. Hübner S, et al.
    Plant importin alpha binds nuclear localization sequences with high affinity and can mediate nuclear import independent of importin beta.
    J. Biol. Chem., 1999. 274(32): p. 22610-7
    [PMID:10428841]
  2. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  3. Bayer EM, et al.
    Arabidopsis cell wall proteome defined using multidimensional protein identification technology.
    Proteomics, 2006. 6(1): p. 301-11
    [PMID:16287169]
  4. Bhattacharjee S, et al.
    IMPa-4, an Arabidopsis importin alpha isoform, is preferentially involved in agrobacterium-mediated plant transformation.
    Plant Cell, 2008. 20(10): p. 2661-80
    [PMID:18836040]
  5. Marín M,Thallmair V,Ott T
    The intrinsically disordered N-terminal region of AtREM1.3 remorin protein mediates protein-protein interactions.
    J. Biol. Chem., 2012. 287(47): p. 39982-91
    [PMID:23027878]
  6. Luo Y, et al.
    An Arabidopsis homolog of importin β1 is required for ABA response and drought tolerance.
    Plant J., 2013. 75(3): p. 377-89
    [PMID:23582042]
  7. Herud O,Weijers D,Lau S,Jürgens G
    Auxin responsiveness of the MONOPTEROS-BODENLOS module in primary root initiation critically depends on the nuclear import kinetics of the Aux/IAA inhibitor BODENLOS.
    Plant J., 2016. 85(2): p. 269-77
    [PMID:26714008]
  8. Hicks GR,Smith HM,Lobreaux S,Raikhel NV
    Nuclear import in permeabilized protoplasts from higher plants has unique features.
    Plant Cell, 1996. 8(8): p. 1337-52
    [PMID:8776900]
  9. Smith HM,Hicks GR,Raikhel NV
    Importin alpha from Arabidopsis thaliana is a nuclear import receptor that recognizes three classes of import signals.
    Plant Physiol., 1997. 114(2): p. 411-7
    [PMID:9193081]
  10. Ballas N,Citovsky V
    Nuclear localization signal binding protein from Arabidopsis mediates nuclear import of Agrobacterium VirD2 protein.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(20): p. 10723-8
    [PMID:9380702]