PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782036
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 480aa    MW: 55585.3 Da    PI: 6.7789
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782036genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.26.4e-22233289155
    G2-like   1 kprlrWtpeLHerFveaveqLG.G.sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k r++W  +LH++F+eav+ LG G + +A+Pk+ile mk++g+++e+v+SHLQkYRl
  676782036 233 KRRVVWDDNLHNKFMEAVSYLGnGsESQAVPKKILERMKMDGISRENVASHLQKYRL 289
                689******************8542568****************************8 PP
2Response_reg47.68.8e-17551621108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl  d++p  +++l++ l++ +y ev ++++ e a+ ll++++  +D+ ++  + ++ d ++l++ei +e  +lpii+++  ++ e +++ ++ Ga 
     676782036  55 VLAFDEDPQCLHILENHLKEFQY-EVFACREEERAMYLLRNHRrtFDIAIVEAQYSDGDRFRLISEIGSEM-DLPIIIISKDDSVESVIKWMRNGAC 149
                   67789******************.***************999999**********************7755.8************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+l Kp+ pe+l+
     676782036 150 DYLIKPIRPEDLR 162
                   ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.12E-2351179IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.6E-2352176No hitNo description
SMARTSM004483.2E-953165IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.26754169IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-1255163IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.09E-1059168No hitNo description
SuperFamilySSF466891.31E-14230293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-21231293IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-21233290IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MPDYIRKTRS RQSSEMAEKW EHHIISFGDD GGCSQRDHPN SSDMFSSKFP NGLRVLAFDE  60
DPQCLHILEN HLKEFQYEVF ACREEERAMY LLRNHRRTFD IAIVEAQYSD GDRFRLISEI  120
GSEMDLPIII ISKDDSVESV IKWMRNGACD YLIKPIRPED LRLIFKHLVK KMEVRRSVAV  180
AGEAEEKAPP EKSSSVGDST IRKYPNKRKR SMCLDGQANA EDQDHGRDST TKKRRVVWDD  240
NLHNKFMEAV SYLGNGSESQ AVPKKILERM KMDGISRENV ASHLQKYRLN LKKQTNEQRD  300
KRKQTNDQRD ERNQFSTHHI NNILQPSPIQ QQSKNSNHMT QLISPLGHHD DGVSVAISAR  360
NLVMNHHHHH PHPHQMSEFT LIDQNAEVFQ NDNDDEPEIA QIFFTQNPEE MSLFHVPQPM  420
IATTGANGSQ LFANPQHMMH VHEPSVHIPV PSSLTHSSFL DQNENMVNIH GQQWLYREQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14229293162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478355.11e-157PREDICTED: two-component response regulator ARR14-like
SwissprotQ9FJ161e-106APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M41e-143A0A087G9M4_ARAAL; Uncharacterized protein
STRINGXP_006407384.11e-142(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.12e-97pseudo-response regulator 4