PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782122
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 182aa    MW: 20730.5 Da    PI: 9.8617
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782122genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-0992115326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++lC++f  + +C++Gd+C++ H+
  676782122  92 RSLCNRFITSNFCPFGDSCRYLHP 115
                689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.207.3E-41648IPR020542Aspartate carbamoyltransferase regulatory subunit, C-terminal
SMARTSM004510.00143065IPR003604Zinc finger, U1-type
SuperFamilySSF576673.37E-113169No hitNo description
PfamPF062205.3E-83264IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.72389117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-690117IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-490116IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-692115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-693114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGARVSHLLN LVRKSETLIK KIEREKKMPS GKYYCDYCEK EFQDTQVARK RHLQSKPHLR  60
ARSLWYSSAT SVLTSPFDPK DVNTQVSSFL PRSLCNRFIT SNFCPFGDSC RYLHPNNIPR  120
NTGLISSHTQ PLPGLPSQHI QGSSLNRDFE SGRQGTGWFD LPPSLRPPPE QGYPQLPSID  180
WG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394904.11e-82zinc finger CCCH domain-containing protein 3
TrEMBLA0A1J3DEY73e-81A0A1J3DEY7_NOCCA; Zinc finger CCCH domain-containing protein 3 (Fragment)
STRINGXP_006394904.15e-82(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-80C3H family protein