PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782258
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 501aa    MW: 56273 Da    PI: 6.6458
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782258genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.11.1e-1391315012374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +  L++cA+a+s++d+ +a++++++l++++s +g+p+qRl ay++e+L a+la+s+s++yk+l+  +++   s++ l+++++++ev+P++kf+++ aN a
  676782258 131 RADLISCAQAMSENDHMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKSLNRCPEP--ASTDLLSYMHILYEVCPYFKFGYMSANGA 228
                678************************************************************666665..499************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+++e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ +s   +   l+ +g+rLak+A++++vpfefn  v+ +++++++++L v+ g
  676782258 229 IAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDTTSAyaRGGGLSIVGNRLAKLAKKFNVPFEFNS-VSVSVSEVKPKNLGVRAG 327
                ************************************************998899999************************.7999************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                EalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n++ F+ rf e+++yy a+f+s++++lpr++++ri+vE+++l+r++vn++a
  676782258 328 EALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFKETMDYYDAMFESIDVTLPRNHKQRINVEQHCLARDVVNIIA 427
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                cega+r+erhe l+kWr+r+++aGF+p+pls  +++++k+ll+++++  yr+ee++g+l+lgW++r Lv+ +aW+
  676782258 428 CEGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNATIKSLLKNYSD-KYRLEERDGALYLGWMQRDLVASCAWK 501
                **********************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.894104482IPR005202Transcription factor GRAS
PfamPF035143.8E-137131501IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MYKHPRQEIE AYSMPPFEAN AVGKLRYIPV NNSRKRYCML EPSSSPYSPA YDVLSNAAFL  60
VSHNNSAYED TSGSCVTDDF NDKIKELETV MMGPDSLDLV VDYNDSFDSM SCQETNSWRS  120
TLEAVSRRDL RADLISCAQA MSENDHMMAH SMMEKLRQMV SVSGEPIQRL GAYLLEGLVA  180
QLASSGSSIY KSLNRCPEPA STDLLSYMHI LYEVCPYFKF GYMSANGAIA EAMKEENRVH  240
IIDFQIGQGS QWVTLIQAFA ARPGGPPRIR ITGIDDTTSA YARGGGLSIV GNRLAKLAKK  300
FNVPFEFNSV SVSVSEVKPK NLGVRAGEAL AVNFAFVLHH MPDESVSTEN HRDRLLRMVK  360
SLSPKVVTLV EQESNTNTAA FFPRFKETMD YYDAMFESID VTLPRNHKQR INVEQHCLAR  420
DVVNIIACEG ADRVERHELL GKWRSRFGMA GFTPYPLSPL VNATIKSLLK NYSDKYRLEE  480
RDGALYLGWM QRDLVASCAW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-641345018375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525330.0AK352533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593626.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593627.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593629.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593630.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593631.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593632.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593633.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593634.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_013593635.10.0PREDICTED: scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A078IZC40.0A0A078IZC4_BRANA; BnaC07g49170D protein
STRINGBo7g089080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]