PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676782350

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GATA

Protein Properties

Length: 710aa MW: 79659.8 Da PI: 10.0518

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676782350	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	22.1	2.1e-07	589	608	1	20
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs C+t kTp+WR gp+g+k 676782350 589 CSDCKTAKTPMWRGGPSGPK 608 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07887	1.1E-91	85	368	IPR012416	CALMODULIN-BINDING PROTEIN60
SuperFamily	SSF57716	1.24E-6	582	643	No hit	No description
SMART	SM00401	2.5E-7	583	659	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.761	583	606	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.4E-8	585	643	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.59E-7	589	643	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002229	Biological Process	defense response to oomycetes
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009620	Biological Process	response to fungus
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0010112	Biological Process	regulation of systemic acquired resistance
GO:0010224	Biological Process	response to UV-B
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0071456	Biological Process	cellular response to hypoxia
GO:0080142	Biological Process	regulation of salicylic acid biosynthetic process
GO:1902584	Biological Process	positive regulation of response to water deprivation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MTIRNKPFHG ASGYSGLKAQ KLTFKKAVKK VMRHLSNDQL MVQMEKMFRR IVQEELGRLI 60 QPHLSSSWSP IERSRSETPS SRSRFKLRFI NSPPSSTIFT GAKIEANDGS PVAIELVDAA 120 TNARVVSGPL SSSRVDFVPL DAEFTEESWT VDVFKRYILK QRQGKRPLLT GDITLTLKDG 180 VGVVAVAFTD NSSWTRSRRF RLGARLTGGG AVEARSEAFK CKDQRGESYK KHHPPHPDDD 240 VWRLVKIAKD GVTAKRLATR EIYTVKDFRR WYATNPNELY KILRVGLGGE GISKKTWDSI 300 VSHANGCVLD ETECYIYDVI AQDVSLFFNS VYEVITVLSG GALRNPDKLP RYHLDQLKHE 360 AYQNISRFRD GRTFADHPQR SLQCPENPGF GVACPGFQHM DFQGSSGPSD SSMPVYFTAA 420 DSTVQPEMLM TFENSAATTL HFDGEFMPTF RNSFRVSEHD LIQGDLQSVV SSYSNNNEDE 480 NDLSYHHHHG IPSNWSPGVV DWDKKLCVSV SGTKEAGTYD VRIGNIGGSP RARWCKVKAA 540 FKLREVWRNT TARKRGKLCS SSSSKCINIA LLNFNREVME GKKETLRYCS DCKTAKTPMW 600 RGGPSGPKWK LDNSRSTLIF ILVVEFKKSL CNACGIRFRK QRRSELLGVR ITHSHKACKK 660 INPPPSSRSP SPSPLSLSHS GMALKKQRNL KEEEQAALCL LLLSCSSVFA

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MTIRNKPFHG ASGYSGLKAQ KLTFKKAVKK VMRHLSNDQL MVQMEKMFRR IVQEELGRLI  60
QPHLSSSWSP IERSRSETPS SRSRFKLRFI NSPPSSTIFT GAKIEANDGS PVAIELVDAA  120
TNARVVSGPL SSSRVDFVPL DAEFTEESWT VDVFKRYILK QRQGKRPLLT GDITLTLKDG  180
VGVVAVAFTD NSSWTRSRRF RLGARLTGGG AVEARSEAFK CKDQRGESYK KHHPPHPDDD  240
VWRLVKIAKD GVTAKRLATR EIYTVKDFRR WYATNPNELY KILRVGLGGE GISKKTWDSI  300
VSHANGCVLD ETECYIYDVI AQDVSLFFNS VYEVITVLSG GALRNPDKLP RYHLDQLKHE  360
AYQNISRFRD GRTFADHPQR SLQCPENPGF GVACPGFQHM DFQGSSGPSD SSMPVYFTAA  420
DSTVQPEMLM TFENSAATTL HFDGEFMPTF RNSFRVSEHD LIQGDLQSVV SSYSNNNEDE  480
NDLSYHHHHG IPSNWSPGVV DWDKKLCVSV SGTKEAGTYD VRIGNIGGSP RARWCKVKAA  540
FKLREVWRNT TARKRGKLCS SSSSKCINIA LLNFNREVME GKKETLRYCS DCKTAKTPMW  600
RGGPSGPKWK LDNSRSTLIF ILVVEFKKSL CNACGIRFRK QRRSELLGVR ITHSHKACKK  660
INPPPSSRSP SPSPLSLSHS GMALKKQRNL KEEEQAALCL LLLSCSSVFA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA in a sequence-specific manner, 5'-GAAATTTTGG-3', to promote the expression of target genes (PubMed:20921422, PubMed:21615571, PubMed:23153277). Recruited to the promoter of ICS1 and other defense-related genes (e.g. PR1, PR2 and EDS5) in response to both biotic (e.g. Pseudomonas syringae pv. maculicola ES4326, P. syringae pv. tomato DC3000, and microbe-associated molecular patterns (MAMPs) such as flg22) and abiotic stresses (e.g. UV-B, drought and abscisic acid), thus triggering rapid defense responses by stimulating salicylic acid (SA) biosynthesis. Involved in basal and systemic acquired resistance to P. syringae and Hyaloperonospora arabidopsidis (PubMed:20921422, PubMed:21615571, PubMed:22466450, PubMed:19214217). Mediates resistance to drought and sensitivity to abscisic acid (ABA), especially for ABA-mediated signaling process that regulates early seedling growth (PubMed:22466450). {ECO:0000269\|PubMed:19214217, ECO:0000269\|PubMed:20921422, ECO:0000269\|PubMed:21615571, ECO:0000269\|PubMed:22466450, ECO:0000269\|PubMed:23153277}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676782350

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced rapidly by pathogenic bacteria Pseudomonas syringae pv. maculicola ES4326 and P. syringae pv. tomato DC3000, by the root-colonizing endophytic plant growth-promoting fungus Piriformospora indica, and by microbe-associated molecular patterns (MAMPs) such as flg22 and hrcC in both local and systemic leaves in both local and systemic leaves (PubMed:20921422, PubMed:19214217, PubMed:23153277, PubMed:23118477). Accumulates transiently in response to 12-oxo-phytodienoic acid (OPDA) (PubMed:16258017). {ECO:0000269\|PubMed:16258017, ECO:0000269\|PubMed:19214217, ECO:0000269\|PubMed:20921422, ECO:0000269\|PubMed:23118477, ECO:0000269\|PubMed:23153277}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151166.1	0.0	PREDICTED: calmodulin-binding protein 60 G-like isoform X1
Swissprot	F4K2R6	0.0	CB60G_ARATH; Calmodulin-binding protein 60 G
TrEMBL	A0A397Z605	0.0	A0A397Z605_BRACM; Uncharacterized protein
STRING	Bra009925.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8660	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26930.1	1e-26	GATA transcription factor 23

Publications ? help Back to Top
Wang L, et al. Arabidopsis CaM binding protein CBP60g contributes to MAMP-induced SA accumulation and is involved in disease resistance against Pseudomonas syringae. PLoS Pathog., 2009. 5(2): p. e1000301 [PMID:19214217] Zhang Y, et al. Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors. Proc. Natl. Acad. Sci. U.S.A., 2010. 107(42): p. 18220-5 [PMID:20921422] Wang L, et al. CBP60g and SARD1 play partially redundant critical roles in salicylic acid signaling. Plant J., 2011. 67(6): p. 1029-41 [PMID:21615571] Weston DJ, et al. Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Mol. Plant Microbe Interact., 2012. 25(6): p. 765-78 [PMID:22375709] Wan D, et al. Calmodulin-binding protein CBP60g is a positive regulator of both disease resistance and drought tolerance in Arabidopsis. Plant Cell Rep., 2012. 31(7): p. 1269-81 [PMID:22466450] Venus Y,Oelmüller R Arabidopsis ROP1 and ROP6 influence germination time, root morphology, the formation of F-actin bundles, and symbiotic fungal interactions. Mol Plant, 2013. 6(3): p. 872-86 [PMID:23118477] Truman W, et al. The CALMODULIN-BINDING PROTEIN60 family includes both negative and positive regulators of plant immunity. Plant Physiol., 2013. 163(4): p. 1741-51 [PMID:24134885] Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Sun T, et al. ChIP-seq reveals broad roles of SARD1 and CBP60g in regulating plant immunity. Nat Commun, 2015. 6: p. 10159 [PMID:27206545] Kong Q, et al. Two Redundant Receptor-Like Cytoplasmic Kinases Function Downstream of Pattern Recognition Receptors to Regulate Activation of SA Biosynthesis. Plant Physiol., 2016. 171(2): p. 1344-54 [PMID:27208222] Zou B, et al. Calmodulin-binding protein CBP60g functions as a negative regulator in Arabidopsis anthocyanin accumulation. PLoS ONE, 2017. 12(3): p. e0173129 [PMID:28253311] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429] Qin J, et al. The plant-specific transcription factors CBP60g and SARD1 are targeted by a Verticillium secretory protein VdSCP41 to modulate immunity. Elife, 2019. [PMID:29757140]