PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676782494

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 450aa MW: 48735 Da PI: 4.654

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676782494	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.4	1.9e-37	134	232	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+kiW++ 676782494 134 LFQRLWTDEDEIELLRGFLDYiTNHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRKIWNQ 232 79*****************999999999***************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.1E-34	135	231	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MASDEPDAVF SVESPELEED GGGGGGGEGG VGGETDSDED LQENEDAVLP EPNEADDDDP 60 EYEDLNSPSM VSAVSTAPLV SATAKSSSTG TVTVALPAGS AVSVAAIPVD SDPKWHRTTE 120 IVHLRPAIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG SSSHPPDTAP FYEQIKSKLQ 180 LDFNKNQLVE KLRRLKKKYR NVMSKISSGK EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE 240 DNSAMDFEET NNHHHHHVNH TNGSSAFNVS IANATVDIDS ENGLEKKVTV SSTSGSRKRS 300 RSRIGKIDED KPVTLSDGPM PNAATNVNLN ENVAAFGEFS DGRNLGGLIE ETVKSCVSPM 360 IKEMMNGTTG MMMAAVGGYP GGGAHAMGVL SPMLMPSVNL GFGGGGKGVG DERWRRQQIL 420 ELEVYSRRLE LVQEQIRATV NELKTMPSGG

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MASDEPDAVF SVESPELEED GGGGGGGEGG VGGETDSDED LQENEDAVLP EPNEADDDDP  60
EYEDLNSPSM VSAVSTAPLV SATAKSSSTG TVTVALPAGS AVSVAAIPVD SDPKWHRTTE  120
IVHLRPAIDD SRRLFQRLWT DEDEIELLRG FLDYITNHRG SSSHPPDTAP FYEQIKSKLQ  180
LDFNKNQLVE KLRRLKKKYR NVMSKISSGK EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE  240
DNSAMDFEET NNHHHHHVNH TNGSSAFNVS IANATVDIDS ENGLEKKVTV SSTSGSRKRS  300
RSRIGKIDED KPVTLSDGPM PNAATNVNLN ENVAAFGEFS DGRNLGGLIE ETVKSCVSPM  360
IKEMMNGTTG MMMAAVGGYP GGGAHAMGVL SPMLMPSVNL GFGGGGKGVG DERWRRQQIL  420
ELEVYSRRLE LVQEQIRATV NELKTMPSGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	302	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676782494

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395005.1	0.0	probable transcription factor At5g28040
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	V4MLG9	0.0	V4MLG9_EUTSA; Uncharacterized protein
STRING	XP_006395005.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-176	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]