PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782714
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 471aa    MW: 52906.8 Da    PI: 4.9944
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782714genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.48.8e-20189246155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                kpr+ Wtp+L ++F++a++ LGG+ kA P ++l++   m+++gLt++ v SHLQk+Rl
  676782714 189 KPRMSWTPDLQQKFLKALDILGGPRKANPMSLLKClneMNIEGLTRSIVSSHLQKHRL 246
                79****************************9987544499*****************8 PP
2Response_reg524e-182411518107
                   HH.HTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
  Response_reg  18 le.kegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                    +   ++ +  +++++eea++ll  +++++D+++ D  mpg++Gl++lk + ++  +lp++++++ ++ e++ +a   Ga d+++Kp+ +e +
     676782714  24 SSpLTEFPVLMVFTNAEEAIALLttCKHEIDIVIWDYHMPGVNGLQALKILGSKT-DLPVVIMSDDNQTELVMKATLHGACDYVMKPVREEVI 115
                   5554556577899********99777888**********************7766.8******************************988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.9686123IPR001789Signal transduction response regulator, receiver domain
SMARTSM004483.5E-710118IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-1429116IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.7E-2230131IPR011006CheY-like superfamily
CDDcd001562.49E-1532122No hitNo description
Gene3DG3DSA:3.40.50.23008.1E-2335130No hitNo description
SuperFamilySSF466892.33E-10187249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-18188248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-15189246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSVEKTTEDG DKTPLLQQEA SEISSPLTEF PVLMVFTNAE EAIALLTTCK HEIDIVIWDY  60
HMPGVNGLQA LKILGSKTDL PVVIMSDDNQ TELVMKATLH GACDYVMKPV REEVIANIWQ  120
HIVRKRMMSK SKLIPPVQND GLNQGKDDSM TGDQGSNEQS IGNGSDQNSR TVSQSNDGEQ  180
NIDKKNGKKP RMSWTPDLQQ KFLKALDILG GPRKANPMSL LKCLNEMNIE GLTRSIVSSH  240
LQKHRLTIEG KQIPQKTSEI DWSNASISSP LYGLNNGLTA TSSDMNGQAV YPGQESQYQN  300
GLLPLVDNNQ FMTNTMPPLP YFDHDQHLLQ QLQQQQYQLP QQQYQLPQQL DNMVTTNEPE  360
QASSIDVPDL EPFCDPSSLP FDPNEFLMDG CSFRNASVAD GMIYIKDEGT GSRCLISLKI  420
SLKKQCSQQK DDDKDISLWR KKDNCFKKTF SKNTWNQCCQ VYPNQPWAKC V
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782714
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613707.11e-138PREDICTED: putative two-component response regulator ARR19
TrEMBLA0A0D2ZQB71e-135A0A0D2ZQB7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F8J41e-135A0A3P6F8J4_BRAOL; Uncharacterized protein
STRINGBo00641s030.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-56response regulator 20