PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782726
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 524aa    MW: 58526.9 Da    PI: 4.341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782726genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.1e-14217263151
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                sg+kGVr+++ +g ++AeIrdp     + kr +lg+f t e Aa+a+ + + 
  676782726 217 SGFKGVRRRP-WGTFAAEIRDPI----QkKRKWLGTFPTVEAAAEAYQRSKT 263
                79********.**********72....35*****************977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047765.6E-1449112IPR006462Protein MS5
PfamPF008475.3E-8217260IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-14217269IPR016177DNA-binding domain
CDDcd000188.37E-18217273No hitNo description
SMARTSM003801.5E-17218281IPR001471AP2/ERF domain
PROSITE profilePS5103218.597218275IPR001471AP2/ERF domain
PRINTSPR003671.6E-6219230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18219266IPR001471AP2/ERF domain
PRINTSPR003671.6E-6241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MIDGKQNQGL EITGLGPAPY FHLHVVKCKP SDYPPLFTLY AKMGLYNMLE VPESEWQEND  60
WIRLYLEVAF VTTNPAIDNP TLSDLNIVEV VVKTKKTVEP PNAKLKGARN AMSTLNTYHE  120
FCLPEFNGER TMISNKEENY TKEIDLSLIK SVRVVCNDPY ATESSSEDDA ISTNSHRRSI  180
KPKQYLKRYV SKICVPTLIE QSNSISEQVT GNRKSSSGFK GVRRRPWGTF AAEIRDPIQK  240
KRKWLGTFPT VEAAAEAYQR SKTEFEEQLG LINQTVLIKQ EAMEVDLTMS CGSSKPSEKE  300
VNLAKPCGSS KPREKEIDLA KPCVSSKLEE NEVESTKPSN DLPLSPSSVL LLPTLSLDDD  360
AEANGKTVDT GTVVETTFGF GCYDDDEEEG TIGKMLEDPL MTSSISDIFD TDVQPNGLCM  420
DCKTVEYNSI LGDKKNGEIE SNAETCKKNI FENDNKVVKN SEIESMITKI VNGSTDFQLA  480
LEADQMMDDF LLGDALLDDF PMDDFECLGE VDVDKWFNDT IDSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222242RRRPWGTFAAEIRDPIQKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393309.11e-116ethylene-responsive transcription factor ERF117
TrEMBLV4JYL31e-114V4JYL3_EUTSA; Uncharacterized protein
STRINGXP_006393309.11e-115(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.13e-66ERF family protein