PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783392
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 1551aa    MW: 175750 Da    PI: 9.0137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783392genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.6e-20103192697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ++++ l+ +rl l+++f++e ++ + ++ +++l++e+g sW+++l+ +++ g++ +++GW++F+++ngL++g  ++Fkl++r e++lv++v 
  676783392 103 VTPSGLRDDRLNLSRSFVRESDLHEVCG-EIILMNEKGASWTLNLKRKRSCGTMSIAGGWRSFCRSNGLRAGSLFTFKLIKR-EGTLVLRVS 192
                689999****************999998.****************98888889***************************95.555777765 PP
2B360.62.7e-19200295299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++ ++++ +lk+ +l+lp +f+++hg+++e  +++tl++++g +W+  l+ +k+++r+ l +GW++F +ang+k+g++++ kl+++ ++++v+k++ k
  676783392 200 LTLTLKPFNLKNYILYLPLRFTRRHGINEE--TKMTLMNKNGARWSTDLRSEKTRDRVRLVGGWQQFFEANGVKTGESIIVKLIWEGDKSCVLKFCTK 295
                5566677789999*************9955..58****************************************************999999999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.379160IPR003340B3 DNA binding domain
SMARTSM010190.36160IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-12967IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-71357No hitNo description
Gene3DG3DSA:2.40.330.104.7E-172173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1794190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1797190IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-1998191No hitNo description
PROSITE profilePS5086314.94598195IPR003340B3 DNA binding domain
SMARTSM010192.0E-2299194IPR003340B3 DNA binding domain
PfamPF023626.9E-17103192IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-18194294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-19198297IPR015300DNA-binding pseudobarrel domain
CDDcd100178.44E-16198293No hitNo description
SMARTSM010196.0E-21199296IPR003340B3 DNA binding domain
PROSITE profilePS5086314.085199296IPR003340B3 DNA binding domain
PfamPF023622.5E-17199295IPR003340B3 DNA binding domain
PfamPF142443.1E-8362392IPR029472Gag-polypeptide of LTR copia-type
PfamPF142234.3E-7403550No hitNo description
PROSITE profilePS501589.257593606IPR001878Zinc finger, CCHC-type
PfamPF139764.1E-7695742IPR025724GAG-pre-integrase domain
PROSITE profilePS5099420.524753917IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.105.8E-29754910IPR012337Ribonuclease H-like domain
SuperFamilySSF530986.22E-40755912IPR012337Ribonuclease H-like domain
PfamPF006659.0E-19758868IPR001584Integrase, catalytic core
PfamPF077278.7E-9511541396IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566722.52E-2711551375No hitNo description
SuperFamilySSF566722.52E-2714051500No hitNo description
CDDcd092722.13E-3214371532No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1551 aa     Download sequence    Send to blast
MAKLRSDASK IAWEVEIEDG HKLSGGWKQF ALAHDLRIGD ILIFRQEKDM DFHVTLLGPS  60
CCEIQYESYL ENENNLENIQ RMKNPKGEAE FSSLDPSCYV ANVTPSGLRD DRLNLSRSFV  120
RESDLHEVCG EIILMNEKGA SWTLNLKRKR SCGTMSIAGG WRSFCRSNGL RAGSLFTFKL  180
IKREGTLVLR VSSQFQDRFL TLTLKPFNLK NYILYLPLRF TRRHGINEET KMTLMNKNGA  240
RWSTDLRSEK TRDRVRLVGG WQQFFEANGV KTGESIIVKL IWEGDKSCVL KFCTKRLSMD  300
NMSMPRVVIR SLIYFLEKDG RKRKERDGRM NFGNGWIVFA EANDTKPSES VTLELINFGS  360
QNSYDKWSSE LENALRAKRK IGFINGSLKL PNEKEKPVEA EMWRTANSMI VGWIRSSISP  420
VLRSTIPFNP DAYKMWTELK KRFSVGSAVR VHQLKAELAS CRQEGSTVME YFGKLSQKWE  480
ELLSCKPIPT CTCAASEVYA REYEEEKVHQ FLMGLDEVRF GNVCTNIIGL EVLPDLNSVY  540
QRVVREEKRL GGSRLEPKEA PVGFTSKGVP SGDEPTMGGL MAAVARGRSS VVCGNCGRTG  600
HEKKECWQII GFPEWFTERN QANGRGGRGG RGRGRSNSSR ANAVQTPGAT SSGTQGGTVP  660
QLSAEQWASL TAYIEQQKPS PIPDKLNVKR GHRVKASEDP TVWHRRLGHP AFGVLSFLPF  720
VAGFKDISNK FGGCDICFQS KQTREVFSES LNKSSSSFDL IHVDLWGPYR KPSSCGAVYL  780
LTIVDDFTRA VWIHLLLEKS EVKTVLPNFI SLAARQFGKQ VKTVRSDNGT EFMCLSEYFA  840
AAGIVHQTSC VGTPQQNGRV ERKHRHILNV ARSILFHANL PVSFWGESVL TAAHLINRTP  900
TKLLQGKTPY ECLFGKPPSY DDIKTFGCLC YAHKARRDND KFGVRSTRCV FVGYPYSKKG  960
WKLYDLDTEK FFVSRDVVFD EEIFPYAEKK MVETPIIPPP CVAYYDEEEL PAIVVENGSS  1020
EQEASAEIPV GVSEEVGQKQ TSPNETEVQL GRGHRQQIPS VRLRDYVTYN AQVCPDKHNT  1080
IAVLQSETST NVSGKSHSLY PITDSVCDDF FSDHHQAFLA AVSAGVIPRN YKEAFADERW  1140
NKAVKGEVTA LELNRTWDLA DLPPGKKAIG IKWVFTIKYN ADGSIERYKA RLVCCGNHHV  1200
EGEDYEETFA PVAKMDTVRT LLEVAAAKNW EVHQMDVHNA FLQGDLEEEV YMRLPPGFHS  1260
DDPNKVCKLR KSLYGLKQAP RCWFEKLSDA LKKLGFKQSY EDYSLFFFVK GEKCIRVLIY  1320
VDDMIIAGND LTLIEKFKKR LSETFHMKDL GKAKYFLGIE IARGPLGMYL SQRKYALDII  1380
NEAGLLGSKP ATTPMEVNHH LLRNDIPLMK DPVKFRRVVG RLVYLTVTRP EHDDRSQLIW  1440
LCWGTHRWLG RQRSRIRLLA DLGVRHEAPM DLFCDSKSAI YIAANPVFHE RTKHVEKDCH  1500
SVRDAVKAKL IETRHVRTTE QLADILTKAL GSSSFRYLLS KFRVCNLHAP T
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783392
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639365.10.0PREDICTED: uncharacterized protein LOC106344550
TrEMBLQ9ZVW00.0Q9ZVW0_ARATH; Putative retroelement pol polyprotein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.17e-84B3 family protein