PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783422
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 853aa    MW: 97345.3 Da    PI: 8.7393
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783422genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16545629490
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +++++l+ g  +l+ +f++e+g++k++   l+l  ++g +W+v+ + ++k+++  lt GWkeF+ an+Lk+g+ v+F+++ +++ 
  676783422 545 LRISHNSLTIGVQYLSVPFMRENGMNKPG--LLMLVGRDGVKWKVNAREENKGKALCLTMGWKEFAMANELKTGEYVTFEFVCDNGN 629
                556666777777899*********99776..7***************99999999*************************9986443 PP
2B348.81.2e-157478151687
                EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 +l+ +f++e+g+ k   + ltl  ++g +W+vkl  + ksgr  l++GWkeF+ angLk g+ ++F ++ +
  676783422 747 KYLSLSFMKENGMAKL--RLLTLVGRDGVRWQVKL-KEEKSGRLCLGRGWKEFATANGLKKGEYFTFDFVCE 815
                378999*****98854..58***************.5888999************************98764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501819.921755IPR001810F-box domain
Gene3DG3DSA:3.80.10.107.7E-1410246IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF813831.7E-81047IPR001810F-box domain
SuperFamilySSF520475.89E-9145254No hitNo description
Gene3DG3DSA:3.80.10.107.7E-14347359IPR032675Leucine-rich repeat domain, L domain-like
PfamPF083871.1E-5387422IPR006566FBD domain
Gene3DG3DSA:2.40.330.109.0E-14542627IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-17542638IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14542627IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-14542629IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084542638IPR003340B3 DNA binding domain
CDDcd100175.99E-11558629No hitNo description
SMARTSM010192.6E-13739827IPR003340B3 DNA binding domain
PfamPF023621.6E-13747813IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-13748815IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-13748824IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-13748817No hitNo description
PROSITE profilePS5086312.915749827IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MDQIRYPHKL CSLPDLVLVL IISVLPFKEA VQTSVLSKRW RNLCHQTTNI TFKESEYVKY  60
SVSDAEETKR AARASFVRFM LRWALRFSGE AIGSFHLYIS KPEGFETDIQ TLIGFAVAKR  120
VKNLVLDFSD PSWITNEEAA YEANVIQLPD CFYKLTSLES LKLFACGFDP AQLEEPGTLK  180
ILSFGWIHLS MIMSLLSKSP ILESLSIQNC WDVDLGITGY NNRLREMVFE NCEFVEEFST  240
HDLPNIQIFK YSGNVHYLEF MRVNRMMKEA YLDFGVEKEY EESTGTFLAG LLNELLSAKK  300
LTICPFLIQL IQDSEDPVRL DAPMETKHLV MKTSLLPNEF IGIRLMINSC PELETLTFQM  360
VAPRPVSMTA SAIDPQTYWA FRINHMCLKK TLKVVEFKGF SGSLYELHVL KFLIRSGHVL  420
ERIDLYLPTE LEDDRRRIMA RVVGEEFQPA SERLRMFDHF NATMSNSKTK TDSSSSDHSS  480
RVALITASNL RKDTMCVPQV LCPTEPINAG TQRYNNKKEY CMDLEKKKKR GRPPTSLSQK  540
QFMTLRISHN SLTIGVQYLS VPFMRENGMN KPGLLMLVGR DGVKWKVNAR EENKGKALCL  600
TMGWKEFAMA NELKTGEYVT FEFVCDNGNQ MLRLVNIGST SDRRQIGESS KAMEKEFSSS  660
ETCNINQTNR EKNNKDEGHS NTSSLVQNGT AILEPVADNV KAGTLCLPQA LCPTESISDG  720
TKGDSDKMKK RGRPPNSLNK KQFMTLKYLS LSFMKENGMA KLRLLTLVGR DGVRWQVKLK  780
EEKSGRLCLG RGWKEFATAN GLKKGEYFTF DFVCENGIRM LRLVYTEFTS TDRRQTGESS  840
SKAKKKEFFF HRT
Functional Description ? help Back to Top
Source Description
UniProtComponent of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783422
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419317.10.0PREDICTED: F-box protein At3g62230-like
SwissprotQ9M1Q11e-151FB215_ARATH; F-box protein At3g62230
STRINGXP_010419317.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.14e-54B3 family protein
Publications ? help Back to Top
  1. Gagne JM,Downes BP,Shiu SH,Durski AM,Vierstra RD
    The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(17): p. 11519-24
    [PMID:12169662]