PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676783752

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C3H

Protein Properties

Length: 433aa MW: 50718 Da PI: 5.597

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676783752	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.7e-07	222	246	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++ tG C y +C+F+H+p 676783752 222 ARDCEYYLTTGRCGYNRTCRFNHPP 246 589********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.056	90	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.2	90	116	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.727	219	247	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0012	219	246	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-5	222	246	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.5E-5	222	248	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7	248	270	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.643	249	271	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MDNDDALPIE NEATDYKEMY METLNKLAEA TNKLQVVSYQ IEDAVFWSNM MCAMFPNQVP 60 PSAAHAEGLT VIMFIMVYYF QTSYQEIPER TNLPKCKYFL RGCYKFDSNC VYDHSKKGDG 120 PESMCQAKTI EKQIDEESEE ERRMKGQGES DGRTDRSRER DPSSREAERG RNPDSGRREC 180 YVRTDRSHER DPRSWEARRL QERNQMRHEP VQTSPFPVRP GARDCEYYLT TGRCGYNRTC 240 RFNHPPNHVA PFFQSGNCNK GSDCAYLHPK DTAPMLQTTT ESSFSMAENK GYDNLQAGER 300 DPRERFQDDV VAGYKRVRIE EGGGYIGWQR VEGQEIVQVR REIQSWGRQA HQEDMQRQNN 360 ERSPRREIDE ESEEERRMKN HNVKGLTAKE NLHGQEQADM ERQVREAEEK AQEQLRIDTA 420 RREARLRNEQ VQN

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MDNDDALPIE NEATDYKEMY METLNKLAEA TNKLQVVSYQ IEDAVFWSNM MCAMFPNQVP  60
PSAAHAEGLT VIMFIMVYYF QTSYQEIPER TNLPKCKYFL RGCYKFDSNC VYDHSKKGDG  120
PESMCQAKTI EKQIDEESEE ERRMKGQGES DGRTDRSRER DPSSREAERG RNPDSGRREC  180
YVRTDRSHER DPRSWEARRL QERNQMRHEP VQTSPFPVRP GARDCEYYLT TGRCGYNRTC  240
RFNHPPNHVA PFFQSGNCNK GSDCAYLHPK DTAPMLQTTT ESSFSMAENK GYDNLQAGER  300
DPRERFQDDV VAGYKRVRIE EGGGYIGWQR VEGQEIVQVR REIQSWGRQA HQEDMQRQNN  360
ERSPRREIDE ESEEERRMKN HNVKGLTAKE NLHGQEQADM ERQVREAEEK AQEQLRIDTA  420
RREARLRNEQ VQN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676783752

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29600.1	3e-15	C3H family protein