PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676784214

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 675aa MW: 76410.1 Da PI: 6.7583

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676784214	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.4e-50	38	160	6	128
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 rF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++s k+ +g+k 676784214 38 RFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKS-KKMIIGMK 135 9**********************.99***********6448899999**********************************.9999 PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 ktLvfy+grap+ge+t+W+mheyr+ 676784214 136 KTLVFYRGRAPRGERTNWIMHEYRA 160 *********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.777	33	183	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	38	159	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-59	38	183	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MAPALLRSHR ELFESKAEQR RFKKAYDRRV NKKIEPRRFR PTDEELINHY LRLKINGRDL 60 EVRVIPEIDV CKWEPWDLPG LSVIKTDDQE WFFFCPRDRK YPSGHRSNRA TDIGYWKATG 120 KDRTIKSKKM IIGMKKTLVF YRGRAPRGER TNWIMHEYRA TNKDLDGTGP GQNPYVLCRL 180 FHKPSDSCDV ANCDEVENVN STPTTTRCSR DEASSEMVQE TAASHVRALN RSDDTEACPS 240 DKDSDVKPDG SVIKTEKSVD HAETSRAKDR VSGKSPVEEN QLPRDFPTPY GPNYTKISDQ 300 AYYPVQSSIG FAASQMDSMF SSDFGNYDFG LHFEDGAAIQ DESLKDVLDE VFHNHNQSSS 360 EGKDFAHPNM MQWSTEYPFP KDTGGFLNGG AEAACSLFVP DIGGSRFVRD HHVDSKEAVE 420 IQSSSGSSRA LTPLHSNVLG QYAPASYATM DPFNSNVNHR EQSSFEQSPV DRSISPSDTS 480 VFTSSRENQT ELDFVVNQGT APRRIRLRIE QPFKPVENME ERDADSYEED EVQSAMTKVV 540 EGKEKCFLLD KNNNRGQGHG SLSESANLRT QGTAQRSIRL QTRMQKVPLT LSNSNLSEEA 600 SRSKEREEDV SSSSSSSSSS WQKQKKLIRR SLMQCSSMVI IMAAIVVLVG MWKESRDAKC 660 SFLFHQLDSF KGMFI

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MAPALLRSHR ELFESKAEQR RFKKAYDRRV NKKIEPRRFR PTDEELINHY LRLKINGRDL  60
EVRVIPEIDV CKWEPWDLPG LSVIKTDDQE WFFFCPRDRK YPSGHRSNRA TDIGYWKATG  120
KDRTIKSKKM IIGMKKTLVF YRGRAPRGER TNWIMHEYRA TNKDLDGTGP GQNPYVLCRL  180
FHKPSDSCDV ANCDEVENVN STPTTTRCSR DEASSEMVQE TAASHVRALN RSDDTEACPS  240
DKDSDVKPDG SVIKTEKSVD HAETSRAKDR VSGKSPVEEN QLPRDFPTPY GPNYTKISDQ  300
AYYPVQSSIG FAASQMDSMF SSDFGNYDFG LHFEDGAAIQ DESLKDVLDE VFHNHNQSSS  360
EGKDFAHPNM MQWSTEYPFP KDTGGFLNGG AEAACSLFVP DIGGSRFVRD HHVDSKEAVE  420
IQSSSGSSRA LTPLHSNVLG QYAPASYATM DPFNSNVNHR EQSSFEQSPV DRSISPSDTS  480
VFTSSRENQT ELDFVVNQGT APRRIRLRIE QPFKPVENME ERDADSYEED EVQSAMTKVV  540
EGKEKCFLLD KNNNRGQGHG SLSESANLRT QGTAQRSIRL QTRMQKVPLT LSNSNLSEEA  600
SRSKEREEDV SSSSSSSSSS WQKQKKLIRR SLMQCSSMVI IMAAIVVLVG MWKESRDAKC  660
SFLFHQLDSF KGMFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	38	187	22	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	38	187	22	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	38	187	22	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	38	187	22	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	38	187	25	172	NAC domain-containing protein 19
3swm_B	2e-42	38	187	25	172	NAC domain-containing protein 19
3swm_C	2e-42	38	187	25	172	NAC domain-containing protein 19
3swm_D	2e-42	38	187	25	172	NAC domain-containing protein 19
3swp_A	2e-42	38	187	25	172	NAC domain-containing protein 19
3swp_B	2e-42	38	187	25	172	NAC domain-containing protein 19
3swp_C	2e-42	38	187	25	172	NAC domain-containing protein 19
3swp_D	2e-42	38	187	25	172	NAC domain-containing protein 19
4dul_A	1e-42	38	187	22	169	NAC domain-containing protein 19
4dul_B	1e-42	38	187	22	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676784214

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, heat and drought stresses. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024008494.1	0.0	NAC domain-containing protein 14 isoform X2
Swissprot	B5X570	0.0	NAC14_ARATH; NAC domain-containing protein 14
TrEMBL	A0A1J3GT57	0.0	A0A1J3GT57_NOCCA; NAC domain-containing protein 86
STRING	Bostr.3359s0059.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5594	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	0.0	NAC 014