PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676784370
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23701.8 Da    PI: 9.7487
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676784370genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.54.2e-193072446
               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
               +   +r+  +s R n+i+KKA ELS+LCd+ev+v++++ +gkl
  676784370 30 SAAKKRHSDLSSRENTIFKKATELSILCDVEVCVLYYGRDGKL 72
               556789999*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-101078IPR002100Transcription factor, MADS-box
CDDcd002667.28E-1622104No hitNo description
SuperFamilySSF554553.27E-1632114IPR002100Transcription factor, MADS-box
PfamPF003194.1E-133372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.6573479IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-54156IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-55677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MESSSCSSTK MRTKLSVRHQ TRFKKSSLSS AAKKRHSDLS SRENTIFKKA TELSILCDVE  60
VCVLYYGRDG KLIKTLPEDQ SKVRDMAERF QNLSEKEKFK KRTNLSQFLN KKIKDEMKRC  120
LENNDNTFLH KVLEFEDSLR TKLRILENKQ TDEPDHQNQN LAVSSSSSFL SADDRCWSNF  180
CRSFCYSSTT STPSMIYQNK NAVY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676784370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290011.12e-54agamous-like MADS-box protein AGL53
SwissprotQ7X9N23e-44AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1194e-53R0H119_9BRAS; Uncharacterized protein
STRINGBostr.29827s0112.1.p4e-55(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.11e-47AGAMOUS-like 54
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]