PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676784544
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 244aa    MW: 27024.8 Da    PI: 4.8309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676784544genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1761110255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  676784544  61 VYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATADMAARAHDVAALTIKG 110
                59****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.58961118IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2061119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-3161119IPR001471AP2/ERF domain
SMARTSM003801.9E-3561124IPR001471AP2/ERF domain
PfamPF008476.4E-1261110IPR001471AP2/ERF domain
PRINTSPR003672.1E-106273IPR001471AP2/ERF domain
CDDcd000182.98E-3162120No hitNo description
PRINTSPR003672.1E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTSSNSSSSP TSSSSDQSSV TTTTSTHLSE TSPKKNTRKR RRDSSPSSSS SSSTPSKHPV  60
VYRGVRMRSW GKWVSEIRQP RKKTRIWLGT FATADMAARA HDVAALTIKG SSAVINFPEL  120
ASVFPRPASS SPQDIQAAAA EAAAMVVDGK TLETETEEAP PSSESSYVAA ESKEEEERLE  180
EIVELPNIEE WCYDGSVKSR ADLDYSEPLD CWVYPPPVMD FHEEFLEFNF LELWSFPHTE  240
LINH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16621181572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676784544
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406852.11e-121ethylene-responsive transcription factor ERF036
SwissprotQ9LU187e-99ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLV4LCY01e-119V4LCY0_EUTSA; Uncharacterized protein
STRINGXP_006406852.11e-120(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.17e-52ERF family protein