PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676785176

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 240aa MW: 27443.9 Da PI: 9.3818

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676785176	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	94.5	1.7e-29	43	169	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppG+r Ptdeel+ +Lk+ +++kkl+ + +++++iy+++P++L + +k++ +ew+f s+r k ++ gk+ +r+ + gyW+atg ke+ + + l 676785176 43 PPGLRSVPTDEELILGHLKPFLKNKKLPWPSLpVHRANIYESNPQQLSaNYAKGNLNEWFFISERTKINKDGKNLKRSDHGGYWHATGA-KEINA-IKDL 140 9***********************9998877**********9456666777***************************9.78887.7889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 v k+tL +y ++p+ +k++W+m+ey l 676785176 141 VSYKTTLSYYVRKKPNEVKSSWLMQEYWL 169 *************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-34	37	196	IPR003441	NAC domain
PROSITE profile	PS51005	33.928	42	196	IPR003441	NAC domain
Pfam	PF02365	1.9E-15	43	168	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MTPQRNKRRK RSSSEPETQQ SLPNHDPNMP SSSSSLSAPF VYPPGLRSVP TDEELILGHL 60 KPFLKNKKLP WPSLPVHRAN IYESNPQQLS ANYAKGNLNE WFFISERTKI NKDGKNLKRS 120 DHGGYWHATG AKEINAIKDL VSYKTTLSYY VRKKPNEVKS SWLMQEYWLQ SCDDDNKTQD 180 DDDKTVDYAL CKIYLSPMAK NKQKEDGVDA EALGKVVQPR NVENQQPQPQ PQFCPTPTPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-15	43	194	18	163	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-15	43	194	18	163	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-15	43	194	18	163	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-15	43	194	18	163	NO APICAL MERISTEM PROTEIN
3swm_A	6e-15	43	194	21	166	NAC domain-containing protein 19
3swm_B	6e-15	43	194	21	166	NAC domain-containing protein 19
3swm_C	6e-15	43	194	21	166	NAC domain-containing protein 19
3swm_D	6e-15	43	194	21	166	NAC domain-containing protein 19
3swp_A	6e-15	43	194	21	166	NAC domain-containing protein 19
3swp_B	6e-15	43	194	21	166	NAC domain-containing protein 19
3swp_C	6e-15	43	194	21	166	NAC domain-containing protein 19
3swp_D	6e-15	43	194	21	166	NAC domain-containing protein 19
4dul_A	7e-15	43	194	18	163	NAC domain-containing protein 19
4dul_B	7e-15	43	194	18	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676785176

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745280.1	4e-71	NAC domain-containing protein 41
Refseq	XP_018460409.1	8e-72	PREDICTED: NAC transcription factor 29-like
TrEMBL	A0A397ZI18	2e-61	A0A397ZI18_BRACM; Uncharacterized protein
TrEMBL	D7LVH1	7e-62	D7LVH1_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.5__2087__AT3G56530.1	1e-62	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	3e-57	NAC domain containing protein 64