PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676785220
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 554aa    MW: 64052.5 Da    PI: 7.08
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676785220genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.21.6e-36471721128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lppGfrF P+d+e++ +yL+  ++gk l++   i++v+iyk++P +L +++k+ ++k ew+f ++r kky +g+r+  +++ gyWkatg++++  + ++ 
  676785220  47 LPPGFRFVPKDDEII-DYLNSFLDGKILDI--DIHRVNIYKYDPIQLAAEFKEgNDKgEWFFITERIKKYDRGTRPDCSANGGYWKATGSEEKFPT-GKD 142
                79*************.9**********988..59*************96555523336************************************99.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  g k+tLvfy+g++p+g ktdW+m+eyr 
  676785220 143 MFGSKRTLVFYTGKQPRGIKTDWIMKEYRS 172
                ****************************96 PP
2NAM118.37.1e-372383642128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 pG+rF P+ eel+ +yLk+ ++g +++    i+ v+iy+++P++L  k+k+  +e++++fF++r+kky +g+r   +++ gyWkatg++++  + ++  
  676785220 238 RPGYRFVPKKEELIIYYLKPFLDGYRFPN-IDIHPVNIYEYNPKQLIDKYKKgnDENKCFFFTERRKKYDRGTRVDCSANGGYWKATGSEEKFPT-GKDM 335
                79************************999.56**************7444332266699**********************************99.999* PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 g k+tLvfy+g++p+g ktdW+m+eyr 
  676785220 336 FGYKRTLVFYTGKQPRGIKTDWIMKEYRS 364
                ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3841202IPR003441NAC domain
PROSITE profilePS5100540.30247202IPR003441NAC domain
PfamPF023655.5E-1848171IPR003441NAC domain
SuperFamilySSF1019415.23E-42234391IPR003441NAC domain
PROSITE profilePS5100541.22237391IPR003441NAC domain
PfamPF023656.5E-19239363IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MAARTSSVRQ TQDTQPPLIE DTNTMDVNQE TAPSGLQIQV ASTAYLLPPG FRFVPKDDEI  60
IDYLNSFLDG KILDIDIHRV NIYKYDPIQL AAEFKEGNDK GEWFFITERI KKYDRGTRPD  120
CSANGGYWKA TGSEEKFPTG KDMFGSKRTL VFYTGKQPRG IKTDWIMKEY RSESSDNPPP  180
PPSSNNMDSN MLDIVLCKIY KSPMGKERKA EVEDKDFMTQ KSALLGNIDS YNKPFILRPG  240
YRFVPKKEEL IIYYLKPFLD GYRFPNIDIH PVNIYEYNPK QLIDKYKKGN DENKCFFFTE  300
RRKKYDRGTR VDCSANGGYW KATGSEEKFP TGKDMFGYKR TLVFYTGKQP RGIKTDWIMK  360
EYRSDDPLPS PSSNNEENKM LDTVLCKIYL SPMGKKMKAE EEQEVEGFPR PSPFDELSSI  420
FFPRQQKALR IGDSTEDLSL DPLHPPSSNN EDNKMLDTVW CKNYLSPMDK KMKVEEEQEV  480
EGEYLPRPSP FDELSSIFYP RQQKALRIGD STEDHSLDPS LLEDMRGRQS KKRKICINKT  540
HPSTSSHGPW PYLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-29353895164NO APICAL MERISTEM PROTEIN
1ut4_B1e-29353895164NO APICAL MERISTEM PROTEIN
1ut7_A1e-29353895164NO APICAL MERISTEM PROTEIN
1ut7_B1e-29353895164NO APICAL MERISTEM PROTEIN
3swm_A2e-29353898167NAC domain-containing protein 19
3swm_B2e-29353898167NAC domain-containing protein 19
3swm_C2e-29353898167NAC domain-containing protein 19
3swm_D2e-29353898167NAC domain-containing protein 19
3swp_A2e-29353898167NAC domain-containing protein 19
3swp_B2e-29353898167NAC domain-containing protein 19
3swp_C2e-29353898167NAC domain-containing protein 19
3swp_D2e-29353898167NAC domain-containing protein 19
4dul_A1e-29353895164NAC domain-containing protein 19
4dul_B1e-29353895164NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMap676785220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.18e-37NAC domain containing protein 64