PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676785308
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 477aa    MW: 55140.1 Da    PI: 5.4219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676785308genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.43e-153114371127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                lppG+rF+Pt  ++ + yL+kk+ g +++   + ++  di++  P+dLp   + +e++w+f++++ +    g+ +      + W   gkd++v++ ++++
  676785308 311 LPPGVRFRPTYLQMADIYLRKKALGLPIRSRFTpVECHDIFSKPPRDLPG--YPRETQWHFYCRKPN----GQDP-----PSLWTRIGKDTTVHDPHKNV 399
                79*************************88855536666***********4..34789******9855....4444.....457***************** PP

        NAM 100 vglkktLvfy..........kgrapkgektdWvmheyr 127
                vg+k+ +++             +++++   +W m+e +
  676785308 400 VGIKRRFTLTeqeedsndiyLPDEEEPPIEEWYMNEIS 437
                *********94333332222134444456777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5113811.121113199IPR005491ENT domain
SMARTSM011916.5E-7113180IPR005491ENT domain
PfamPF037353.6E-11114171IPR005491ENT domain
SuperFamilySSF1586391.44E-5115171IPR005491ENT domain
SuperFamilySSF1019414.58E-22309455IPR003441NAC domain
PROSITE profilePS5100522.531311455IPR003441NAC domain
PfamPF023653.0E-7312437IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MADKKDLDPY PPAGTSVQKL LMIFLQSSFL IGFLLTFSVH QLGFSSRISQ WFRDFMISNS  60
SAFLVLSMSD LDSVTPCDVE DRSFRPLEKR TMAERSLSEF DRAHESESDL KLKKQKLEQL  120
QRKAYYSLLL ASKAETSEIS HKKSQIIQKL MNEWKIDHQT YISVADKVEK DLLALQSDEK  180
GLRIPQGTPL AKSATSSPTS FVPKDDDLPT NKKMKLDELH NQANVHVLHA FKAESPALSS  240
VKPFLKSFVL YLMLMTLYSE VVLMSFVFLQ SRILIMQDLL EECNKFHIAS IDDKIRTDPL  300
AKILASKDRP LPPGVRFRPT YLQMADIYLR KKALGLPIRS RFTPVECHDI FSKPPRDLPG  360
YPRETQWHFY CRKPNGQDPP SLWTRIGKDT TVHDPHKNVV GIKRRFTLTE QEEDSNDIYL  420
PDEEEPPIEE WYMNEISLPS SVADTDLVLC HIILKKIEKW KEVEEEEEEE EEEEEEE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676785308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589340.11e-122PREDICTED: uncharacterized protein LOC106297688
TrEMBLA0A3P6GRE51e-120A0A3P6GRE5_BRAOL; Uncharacterized protein
STRINGBo6g072200.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1945367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.16e-51NAC family protein