PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676785330
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 458aa    MW: 53054.3 Da    PI: 5.0417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676785330genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.9e-132493652124
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                p G rF+Ptd  ++++yLk k+ g+++    + +e+ di++  P+dLp     +e++wyf+ ++   +           +  W   g+d++v++ +++ v
  676785330 249 PEGDRFRPTDFLMLNYYLKGKALGRPIAG-IIPEEChDIFSKPPRDLPGY--PSETDWYFYGRKPDCQD---------PQNLWTRVGEDTTVFDPDKKGV 336
                7899**********************888.5566668***********43..4689*****99876542.........3457****************** PP

        NAM 101 glkktLvfykgrapkge.....ktdWvmh 124
                g+k+ +++ ++++++       + +W+m+
  676785330 337 GIKRRFTLTEQKEESNDnifsdEEEWFMD 365
                *********77666544334446677775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511389.61752140IPR005491ENT domain
SMARTSM011912.9E-452123IPR005491ENT domain
PfamPF037352.1E-953110IPR005491ENT domain
SuperFamilySSF1019415.23E-17246385IPR003441NAC domain
PROSITE profilePS5100520.191248386IPR003441NAC domain
PfamPF023656.6E-7249365IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MVDKKDLDPK PPAGISDLDS DTPCDVDKRT MAERSLSEFD RAHESESDLE FKKQKLEQLQ  60
KKAYYSLLLA SKAETSAISH NKSQIIQKLM SEWKTDHRTY VSFVDKIEKD LLAPQHITSK  120
SNEKGKHIPE KNVTWSPSYV SQSGTSWGGV NPESVVEKRV RSRLPGEDLR TNKKMRLDEL  180
HKQAYVDVLH AFKAEYPALS SSRALIMQAL QDECNKADIA SSIDDKDFTG AKIVEPKSRL  240
WPDGVRFWPE GDRFRPTDFL MLNYYLKGKA LGRPIAGIIP EECHDIFSKP PRDLPGYPSE  300
TDWYFYGRKP DCQDPQNLWT RVGEDTTVFD PDKKGVGIKR RFTLTEQKEE SNDNIFSDEE  360
EWFMDVISLP STVADTDLIF CHVILTKMEN RKEEEEEEEE EEKEQEEEQH EEKEEEKEEE  420
QEEEEGGRRG GRKGGRRGGR RGRRRKPRYR LLSDIYIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431446RKGGRRGGRRGRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676785330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589340.11e-124PREDICTED: uncharacterized protein LOC106297688
TrEMBLA0A3P6GRE51e-121A0A3P6GRE5_BRAOL; Uncharacterized protein
STRINGBra003244.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.15e-49NAC family protein