PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676786292

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 235aa MW: 26872.4 Da PI: 6.5322

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676786292	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.1	1.1e-42	6	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 + GfrF Pt++el+ +yL++++eg++ ++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+sk+ 676786292 6 TIGFRFYPTEDELIAFYLRNQLEGRSdDTMHRVIPVLDVFEVEPSHLPNiageRCRGDVEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVYSKD 105 68*********************94444567***********656666667888************************************ PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ 676786292 106 NRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 137 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-46	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	46.441	5	162	IPR003441	NAC domain
Pfam	PF02365	1.1E-22	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAEELTIGFR FYPTEDELIA FYLRNQLEGR SDDTMHRVIP VLDVFEVEPS HLPNIAGERC 60 RGDVEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VYSKDNRMIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKAVDE IFNVSTIPKL RHEFSLCRVY ITSGSSRAFD RRPVGILQTE 180 RMLTRDVTVG ATSFRVESSP EPSISGGEHV DISVNADMVD GLIEPIWEWE QLNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-31	5	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-31	5	167	20	173	NAC domain-containing protein 19
3swm_B	4e-31	5	167	20	173	NAC domain-containing protein 19
3swm_C	4e-31	5	167	20	173	NAC domain-containing protein 19
3swm_D	4e-31	5	167	20	173	NAC domain-containing protein 19
3swp_A	4e-31	5	167	20	173	NAC domain-containing protein 19
3swp_B	4e-31	5	167	20	173	NAC domain-containing protein 19
3swp_C	4e-31	5	167	20	173	NAC domain-containing protein 19
3swp_D	4e-31	5	167	20	173	NAC domain-containing protein 19
4dul_A	4e-31	5	167	17	170	NAC domain-containing protein 19
4dul_B	4e-31	5	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676786292

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400742.1	1e-160	NAC domain-containing protein 90 isoform X2
Refseq	XP_024012032.1	1e-160	NAC domain-containing protein 90 isoform X1
Swissprot	Q9FMR3	1e-153	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	V4KW25	1e-158	V4KW25_EUTSA; Uncharacterized protein
STRING	XP_006400742.1	1e-159	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-136	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]