PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676787882
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 250aa    MW: 28991.9 Da    PI: 6.99
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676787882genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.42.6e-3240145199
                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                f+k ltpsdv+k++rlv+pk++ae++        +   e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ +++++
  676787882  40 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRADGGRF 138
                99*****************************99644.46888*************************************************88779999* PP

                EEEEE-S CS
         B3  93 vvkvfrk 99 
                +++++r+
  676787882 139 FIGWRRR 145
                *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4034153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-3137145IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-2839135No hitNo description
SMARTSM010197.1E-2440146IPR003340B3 DNA binding domain
PfamPF023628.3E-3040145IPR003340B3 DNA binding domain
PROSITE profilePS5086314.05740146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSINQYSSDF NYHSLMWQQQ QQQHHHHHQN DVVEEKEALF EKPLTPSDVG KLNRLVIPKQ  60
HAERYFPLAA AAADAVEKGL LLCFEDEEGK PWRFRYSYWN SSQSYVLTKG WSRYVKEKHL  120
DAGDVVLFHR HRADGGRFFI GWRRRGDSSS SSDSYRHLQS NASLQYYPHA GAQAVECQRG  180
NSKTLRLFGV NMECQLDSDW SEPSTPDGST TCPTNHDQFH FYPQQHYPPP YCMDISFTGD  240
VHHQTRSPQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-49331451113B3 domain-containing transcription factor NGA1
5os9_B5e-49331451113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676787882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437389.11e-153PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-150Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A087H3011e-156A0A087H301_ARAAL; Uncharacterized protein
STRINGBostr.23794s0488.1.p1e-157(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-124B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]