PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676787946

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 370aa MW: 42335.7 Da PI: 4.3812

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676787946	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	96.6	2.4e-30	59	154	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++++ w+++De+++L ++d++++t++s+ +d+ afy ++k+ i++++sk+ql++Kir+L k+f ++++++++gk sf++++d++if+ls++iW+ 676787946 59 NSKMTWTKNDELIILGSIVDYENETKVSYRSDWGAFYAYIKDFIEANFSKKQLIDKIRNLNKRFLDNKARSDDGKGLSFTSTDDDEIFKLSMIIWD 154 57899******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-23	62	154	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MVVRKRLRLG GEQSSDSNQD GLEPRRESPL RKMHEDDVSG MEAMFRRRKQ LKTMSSSSNS 60 KMTWTKNDEL IILGSIVDYE NETKVSYRSD WGAFYAYIKD FIEANFSKKQ LIDKIRNLNK 120 RFLDNKARSD DGKGLSFTST DDDEIFKLSM IIWDSNETES ASHENNDQAN DVPFVDHGRV 180 DENMDQSKDV PCVEHERANE QDMDQAKVDV PDVEHERVNE NLDQEKVVHS VEDEQVNENI 240 DQANAVVPDV EHEPLDENMD KENADVPEAE HVPVSNVSME EIDGVEKEKR EEDGVDEFCA 300 LQDALTATTL YQNLGKYQQK LLLQNLRNLG AQRRKDLSDE WKALLAEDMK LYAKKLTLSA 360 KLAEAVGDSS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MVVRKRLRLG GEQSSDSNQD GLEPRRESPL RKMHEDDVSG MEAMFRRRKQ LKTMSSSSNS  60
KMTWTKNDEL IILGSIVDYE NETKVSYRSD WGAFYAYIKD FIEANFSKKQ LIDKIRNLNK  120
RFLDNKARSD DGKGLSFTST DDDEIFKLSM IIWDSNETES ASHENNDQAN DVPFVDHGRV  180
DENMDQSKDV PCVEHERANE QDMDQAKVDV PDVEHERVNE NLDQEKVVHS VEDEQVNENI  240
DQANAVVPDV EHEPLDENMD KENADVPEAE HVPVSNVSME EIDGVEKEKR EEDGVDEFCA  300
LQDALTATTL YQNLGKYQQK LLLQNLRNLG AQRRKDLSDE WKALLAEDMK LYAKKLTLSA  360
KLAEAVGDSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676787946

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022557163.1	1e-140	GLABROUS1 enhancer-binding protein-like 3 isoform X6
Refseq	XP_022574072.1	1e-140	GLABROUS1 enhancer-binding protein-like 3 isoform X7
Swissprot	Q9SJM4	3e-88	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	M4DL63	1e-138	M4DL63_BRARP; Uncharacterized protein
STRING	Bra017244.1-P	1e-138	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	7e-62	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]