PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676787974
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 187aa    MW: 20178.6 Da    PI: 4.5176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676787974genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-171464255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr+++++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  676787974 14 LYRGVRQRRNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64
               69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-281374No hitNo description
PfamPF008473.8E-111364IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-191474IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-271474IPR001471AP2/ERF domain
SMARTSM003801.9E-311478IPR001471AP2/ERF domain
PROSITE profilePS5103221.1271472IPR001471AP2/ERF domain
PRINTSPR003674.7E-51526IPR001471AP2/ERF domain
PRINTSPR003674.7E-53854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPGTSKENGG RHPLYRGVRQ RRNSDKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQTELN FPNSASSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVMA NNSSASSSVE  120
RSNVMMMNGS YENTNGFMDE DLIFDMPNVL MNMAEGMLLS PPRQPTFDSA SEADGYTGVD  180
DYLWSFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-13974974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676787974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069191e-110AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608671e-110AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026851e-110CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466041e-110DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530451e-110DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740539.11e-112ethylene-responsive transcription factor ERF024-like isoform X1
SwissprotQ9SJR05e-91ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A397ZW141e-110A0A397ZW14_BRACM; Uncharacterized protein
STRINGBo3g030140.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.19e-79ERF family protein