PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676788000

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HD-ZIP

Protein Properties

Length: 154aa MW: 18287 Da PI: 9.773

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676788000	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	37	91	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eq++ Le+ F+++++++ +++ L k+lgL+ rq+ vWFqNr+a++k 676788000 37 KKKKKMTTEQIKLLERSFREDMKLDSDRKMNLCKELGLQPRQIAVWFQNRKARWK 91 78999*************************************************9 PP
2	HD-ZIP_I/II	109	3.4e-35	37	128	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+klLE+sF+e+ kL+++rK++l +eLglqprq+avWFqnr+AR+ktkqlE+ ye+L++++ +++e++ L++e +L++ ++ 676788000 37 KKKKKMTTEQIKLLERSFREDMKLDSDRKMNLCKELGLQPRQIAVWFQNRKARWKTKQLEHLYESLRQEFAVVSREKKLLQEELIQLKSMIR 128 59**************************************************************************************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-19	23	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	33	93	IPR001356	Homeobox domain
SMART	SM00389	8.8E-16	36	97	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-16	37	91	IPR001356	Homeobox domain
CDD	cd00086	1.13E-13	37	94	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-19	39	100	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MVETQGGPLH EHYYTPPAMV ERIYGEASNS INGYDQKKKK KMTTEQIKLL ERSFREDMKL 60 DSDRKMNLCK ELGLQPRQIA VWFQNRKARW KTKQLEHLYE SLRQEFAVVS REKKLLQEEL 120 IQLKSMIREN GSSEKQQTWE KACSEAISAQ FQFK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00049	PBM	Transfer from AT2G36610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676788000

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056569	5e-74	DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635693.1	2e-79	PREDICTED: homeobox-leucine zipper protein ATHB-22 isoform X2
Refseq	XP_013709262.1	2e-79	homeobox-leucine zipper protein ATHB-22
Swissprot	Q4PSR7	2e-64	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	A0A3P6BTB0	9e-80	A0A3P6BTB0_BRAOL; Uncharacterized protein
STRING	Bo4g034490.1	6e-79	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	2e-53	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]