PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788056
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 153aa    MW: 17714.8 Da    PI: 8.8324
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788056genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.92.2e-1634122496
     DUF573   4 qrlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                ++ wseeDei++Lq+l+d  + tg   p+ + ++fye vk si+  +s+ q + K+ +L + ++++++k   ++ + f+k+h +k f+l+k++ 
  676788056  34 EKTWSEEDEIAVLQALLDN-SVTGIdFPYRNYNKFYECVKASIN--ASRVQASWKLLKLAQFYNRNRHK--GEEPTCFAKAHARKLFDLCKRLL 122
                678***************8.8889868999**********9986..799****************9999..6677789************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-1335121IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSRKRDQDVV ETSVGSDDAA VTKADDWNQE SLEEKTWSEE DEIAVLQALL DNSVTGIDFP  60
YRNYNKFYEC VKASINASRV QASWKLLKLA QFYNRNRHKG EEPTCFAKAH ARKLFDLCKR  120
LLGPNSGMQN IRDLEFTRHQ TALRTNKRAR RSD
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-12DNA-binding storekeeper protein-related transcriptional regulator