PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788138
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 608aa    MW: 67281.1 Da    PI: 8.6735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788138genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.2e-06112136226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k + C+ f+ +  C+yG++C+F H+
  676788138 112 KGRQCKKFYSGEGCPYGESCTFVHD 136
                7788******66************7 PP
2zf-CCCH35.22.1e-11165190126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+ C+    tG+C++G++C+FaHg
  676788138 165 WKTRMCNKLETTGFCPFGNNCHFAHG 190
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-115082IPR000571Zinc finger, CCCH-type
SMARTSM003560.0215279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6675280IPR000571Zinc finger, CCCH-type
SMARTSM003560.68110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6110137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-7111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-17158194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-9161195IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826164192IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-7165190IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.24E-18389457No hitNo description
Gene3DG3DSA:3.30.40.108.4E-17406455IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.13E-11409455No hitNo description
PfamPF136392.4E-12409452IPR001841Zinc finger, RING-type
SMARTSM001848.1E-7410451IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.357410452IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MSHRRGSGSD AVHVIPTNDP PPENRLPNPS DKSPCKKTRV SPPSSSELGK PFFKTKLCCK  60
FRAGNCPYVA STCHFAHTVE ELLRLPPSNR QETAAETRGE FKIPAESGRP FKGRQCKKFY  120
SGEGCPYGES CTFVHDEASR NRESFAISLG PRGDNAAQIL RPPNWKTRMC NKLETTGFCP  180
FGNNCHFAHG ASELHRFGGG LVEGEGKVGT SASLDTKQTG QADTVTRLVS PGVPSQRAYN  240
AVTQKPDGVR ILRKWKGPDK ISRVYATSLS SVRTIFYFPA SNSQNKNFLL SQAINETGES  300
RSVSDPAVFK MASTATIPDA DVLPSVTMPI TVVLTGVLLF VIVAGFFSLF IWRCLLNRLF  360
SAWTIQRTPY GDLIHVTTPP ENTGLDPFII RSFPLFLYSS ATMKNHGAEC AICLSEFSDE  420
DTVRLITVCR HGFHSTCIDL WFELHKTCPV CRCELDPGLV GSGSHESLHN TVTITIQDLN  480
HDEENPPTTS STSSKRLTEA SAWRFSRSHS TGHFMVKTTD VNVKIKRKHY QTGSSVMFEE  540
NPPTTSSSKR VMEASAWRFS RSHSTGHFMG KTTDVNVKIK GRHYQTGSCV SFDELTRHDE  600
AAEYGMVW
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P6BTZ70.0A0A3P6BTZ7_BRAOL; Uncharacterized protein
STRINGBo4g038640.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-85C3H family protein