PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788164
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family BBR-BPC
Protein Properties Length: 226aa    MW: 25268.2 Da    PI: 10.7801
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788164genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind252.52.6e-7736226102301
  GAGA_bind 102 lsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngv 201
                ++ t+ id +q    p+ ++    +  +  l ++p +e++++++++k+k+ + +++k++++k ++kk+  +++k+ +   s  ++ k+ekk+ d+ ++  
  676788164  36 VQRTTGIDLSQL---PRENPAELVMVPQVRLFTPPSRESRNDIETVKHKSMNLSPSKALKPKPQRKKR--SAPKNPN---S-IPEIKREKKNPDIKIDIS 126
                444555555544...5555555558888899999*****************************99999..3342222...2.35789************* PP

  GAGA_bind 202 slDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                s+D s++P+PvCsCtG++++CYkWG+GGWqS+CCt++iS+yPLP+st+r+g R+agrKmS+ga+ klL +La+eGydl  pvDLk+hWA+HGtnkfvt++
  676788164 127 SFDVSGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGVRLAGRKMSNGAYVKLLMRLAGEGYDLTRPVDLKNHWARHGTNKFVTLK 226
                **************************************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.1E-901226IPR010409GAGA-binding transcriptional activator
PfamPF062179.7E-6753226IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNSYPSRNHM QSATNARKDT GLPTSNANWF NSYFPVQRTT GIDLSQLPRE NPAELVMVPQ  60
VRLFTPPSRE SRNDIETVKH KSMNLSPSKA LKPKPQRKKR SAPKNPNSIP EIKREKKNPD  120
IKIDISSFDV SGVPPPVCSC TGVPKVCYKW GMGGWQSSCC TISISTYPLP MSTTRPGVRL  180
AGRKMSNGAY VKLLMRLAGE GYDLTRPVDL KNHWARHGTN KFVTLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788164
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410714.11e-145protein BASIC PENTACYSTEINE7
SwissprotO822861e-123BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLV4MAM51e-143V4MAM5_EUTSA; Uncharacterized protein
STRINGXP_006410714.11e-144(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-126basic pentacysteine 7