PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788954
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 527aa    MW: 57716.2 Da    PI: 4.5062
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788954genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.57.7e-1331585171374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav++++l+la+al++r+  la++++ +m ++a++f+eALa+r++r        ++ps+++ + s ee   +  f+e +P+lkf+h+taNq
  676788954 158 LVQALVACAEAVQQENLTLADALVKRVGSLAASQAGAMGKVATFFAEALARRIYR--------IHPSSADIDPSFEE-LLQMHFYESCPYLKFAHFTANQ 248
                689****************************************************........55555543334444.44457***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.g 199
                aIleav++++ vH+iD++++qG+QWpaL+qaLa Rp+gpps+R+Tgvg p+  + + ++++g++La++A+++gv+fefn l+a+rl+dle+++++++p  
  676788954 249 AILEAVATARGVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGGPS--EIDGIQQLGWKLAQLAQAIGVEFEFNGLTAERLSDLEPDMFETRPeS 346
                *************************************************87..99*******************************************9* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E+l+Vn+v++lh ll++++s+e+    +L +vk ++P +v+vveqea+hn++ F+erf eal+yys+lfdsle +l  es++r++ E+  lgr+i nvva
  676788954 347 ETLVVNSVFELHPLLARPGSIEK----LLATVKAVRPSIVTVVEQEANHNGAVFVERFNEALHYYSSLFDSLEDGLILESQDRVMSEAY-LGRQILNVVA 441
                ***********************....************************************************98888887766665.********** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +eg+er+erhetl +Wr+r+++aGF pv+++++a kqa+lll+  + +dgy+vee++gsl+l W+++pL+++SaW+
  676788954 442 AEGTERVERHETLDQWRKRMGSAGFDPVNIGSDAFKQASLLLALSGgGDGYSVEENDGSLMLAWQTKPLIAASAWK 517
                ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.7E-332692IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.0E-372698No hitNo description
PROSITE profilePS5098564.589132496IPR005202Transcription factor GRAS
PfamPF035142.7E-130158517IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MTKRTHQETS VEAPSMGKKL EDDNMDELLA VLGYKVRSSD MADVAQKLEQ LEMVLSNDDV  60
LGSNALNDTV HYNPSDLSGW AETMLSELNY YPPSPDLDPT RMCNLRPIPD DNDECCSTSS  120
TSNKRMRRVG PWCDSVSSES TKPVVVLGVD SQETGVRLVQ ALVACAEAVQ QENLTLADAL  180
VKRVGSLAAS QAGAMGKVAT FFAEALARRI YRIHPSSADI DPSFEELLQM HFYESCPYLK  240
FAHFTANQAI LEAVATARGV HVIDLGLNQG MQWPALMQAL ALRPGGPPSF RLTGVGGPSE  300
IDGIQQLGWK LAQLAQAIGV EFEFNGLTAE RLSDLEPDMF ETRPESETLV VNSVFELHPL  360
LARPGSIEKL LATVKAVRPS IVTVVEQEAN HNGAVFVERF NEALHYYSSL FDSLEDGLIL  420
ESQDRVMSEA YLGRQILNVV AAEGTERVER HETLDQWRKR MGSAGFDPVN IGSDAFKQAS  480
LLLALSGGGD GYSVEENDGS LMLAWQTKPL IAASAWKVSA VVPEWRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6315351614378Protein SCARECROW
5b3h_A2e-6315351613377Protein SCARECROW
5b3h_D2e-6315351613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013683095.10.0DELLA protein RGL3-like
SwissprotQ9LF530.0RGL3_ARATH; DELLA protein RGL3
TrEMBLA0A078FR040.0A0A078FR04_BRANA; BnaC09g40420D protein
TrEMBLA0A0D3EER50.0A0A0D3EER5_BRAOL; Uncharacterized protein
STRINGBo9g160170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.10.0RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]