PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676788994

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HB-other

Protein Properties

Length: 162aa MW: 18912.3 Da PI: 9.4193

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676788994	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.6e-20	27	82	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++F+++++p++ +r+ L ++l+Lt +q+k+WFqN+R++ k 676788994 27 KKTYQRHSNHQIQRLEAYFKECPHPDEVQRRNLGEELKLTPKQIKFWFQNKRTQAK 82 78999************************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-18	6	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	24	84	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-19	25	90	IPR009057	Homeodomain-like
SMART	SM00389	6.6E-18	26	88	IPR001356	Homeobox domain
CDD	cd00086	3.34E-15	27	85	No hit	No description
Pfam	PF00046	2.9E-17	27	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDSSRDSSSS DERETSMNTS DGVQGDKKTY QRHSNHQIQR LEAYFKECPH PDEVQRRNLG 60 EELKLTPKQI KFWFQNKRTQ AKAQSEKADN ASLRAENMKI RRENEAMQEA LRTVTCPPCG 120 GPRPGKEERK LYLHNLRAHN ACLKAQINMI YILYLYIRSI EN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269\|PubMed:16778018}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676788994

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590801.1	7e-74	PREDICTED: homeobox-leucine zipper protein HDG9-like
Refseq	XP_022553332.1	9e-76	homeobox-leucine zipper protein HDG9-like
Refseq	XP_022562316.1	9e-76	homeobox-leucine zipper protein HDG9-like
Swissprot	Q9FFI0	2e-60	HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBL	A0A0D3CTZ1	2e-72	A0A0D3CTZ1_BRAOL; Uncharacterized protein
STRING	Bo6g069620.1	3e-73	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17320.1	6e-56	homeodomain GLABROUS 9

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]