PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676789274

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 191aa MW: 22079.3 Da PI: 6.7216

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676789274	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43	9.9e-14	73	120	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +++rr+ +NRe+ArrsR RK+ ++eL v+ L +eN++L ++l++ 676789274 73 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQA 120 689***************************************999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-12	69	133	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.519	71	119	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.3E-11	72	121	No hit	No description
SuperFamily	SSF57959	8.13E-13	73	121	No hit	No description
Pfam	PF00170	1.3E-11	73	123	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.15E-18	74	121	No hit	No description
PROSITE pattern	PS00036	0	76	91	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MQPNYDSSSR NNMQQQDYFH LNHYYNNLNP LTNNNLNLIP YPQIQELNLQ SPASNNSTTS 60 DEATEDIFVI NERKQRRMVS NRESARRSRM RKQRHLDELL SQVAWLRSEN HQLLDKLNQA 120 SGSNDLVLQE NLRIKEENLE LRQVITSMKK LGGAGGGSTS IHGRHCSSSL DHELDQEFSC 180 ITDDPRTYHP S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	92	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00512	DAP	Transfer from AT5G15830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676789274

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240101	0.0	AC240101.1 Sisymbrium irio clone SIR-39M12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627967.1	1e-118	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013740180.1	1e-118	basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-31	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A0D3B1C9	1e-116	A0A0D3B1C9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AG93	1e-116	A0A3P6AG93_BRAOL; Uncharacterized protein
STRING	Bo3g010620.1	1e-117	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10632	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15830.1	3e-88	basic leucine-zipper 3

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]