PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789346
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 417aa    MW: 47780.2 Da    PI: 8.4802
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789346genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000196689123
               EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
               ++C+ Cgk F+    L +H+   H
  676789346 66 FRCGECGKGFRYEKCLSNHQAGmH 89
               89*****************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-46685IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0376689IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2816694IPR007087Zinc finger, C2H2
PROSITE patternPS0002806889IPR007087Zinc finger, C2H2
SuperFamilySSF576674.36E-5314341No hitNo description
PROSITE profilePS501579.91315342IPR007087Zinc finger, C2H2
PfamPF139124.1E-6315338IPR007087Zinc finger, C2H2
SMARTSM003550.38315337IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280317337IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEEDHRHLAK PICGFPRNAK KNQSREEEED SMHHIRCYYG LRENPKKKTQ KSFGLESPEP  60
IKKFLFRCGE CGKGFRYEKC LSNHQAGMHL STSQRVCEES IKSLCSSFSL VRKKKRSRVM  120
RYKKTPLSCS FTTFLESPSI FAENDDELEV AECLILLSKS SPKLVVDGVK LVGEAMDTNP  180
ETSNGFLSCK KMREAAEFEY GIFSSEQKLR EERVSRYATL KESTSFLGDS GKFDWQKRRL  240
YGETEVVVPR NEQKLLKEEI SSDETASFLV HKDELGQCKL PKSCDFESGF YGTELGVGDM  300
EREIVTEPDK RDVEHQCRLC NKIFSSYQAL GGHQTFHRMS RHKKQKNCRE ESVEPEDESV  360
TVKEEKTRHK GITCSRKFRS VRALGGQKKC HSERQHSKTE HGGDLGLLSV VPRTVGI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789346
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400068.11e-170zinc finger protein 485
TrEMBLV4N7C81e-169V4N7C8_EUTSA; Uncharacterized protein
STRINGXP_006400068.11e-169(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-113C2H2 family protein