PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789410
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ZF-HD
Protein Properties Length: 257aa    MW: 27889.4 Da    PI: 8.0986
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789410genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1054.5e-3351107358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   ++YkeClkNhAa +Ggha+DGCgEf+ps++++ +++++l+CaACgCHRnFHRre +
    676789410  51 VATYKECLKNHAAGIGGHALDGCGEFIPSPSSNsSDPTSLTCAACGCHRNFHRREDD 107
                  579***************************999999******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1850105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-3153105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.4E-2853106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.59454105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.18E-17166231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26169230IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-24172228IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDVIATTATI VSDLDSRQPE AEPPTRIQPA KPISFSNGKR CHHHHLASEA VATYKECLKN  60
HAAGIGGHAL DGCGEFIPSP SSNSSDPTSL TCAACGCHRN FHRREDDLSF VSAVVPALEF  120
RPHNRHQLPP PPISAVGIRS PDDDDSASPP PISSSYMLLA LSGGATAVPV SRKRFRTKFS  180
QLQKEKMFEF AERVGWRMPK ADDVSVMEFC REIGVDKSVF KVWMHNNKIT GRGAARRANG  240
GEDGRESVPT NGSVSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-221712311676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420179.11e-146PREDICTED: zinc-finger homeodomain protein 8-like
SwissprotQ9LXG01e-145ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLE4MXS61e-143E4MXS6_EUTHA; mRNA, clone: RTFL01-24-M06
TrEMBLV4N7A51e-143V4N7A5_EUTSA; Uncharacterized protein
STRINGXP_010420179.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-124homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]