PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789656
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 174aa    MW: 19521.5 Da    PI: 7.115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789656genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-054264123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C++ F ++  L  H++ H
  676789656 42 FPCQYCPRKFYTSQALGGHQNAH 64
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.98E-64069No hitNo description
Gene3DG3DSA:3.30.160.600.0014198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0534269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAEPPPSSFH HFVGPSSKHR SSSSSKRYSF SGAQHPTIHR LFPCQYCPRK FYTSQALGGH  60
QNAHKRERAA ARRNLGVVSH HAPTILDDNS FLRPYPCNLY PNQPHQGPTS SETTGSAWSV  120
VPDHQQTTTM MVGGYDPYPY PYGYPFEVSF NGNGNAMEEE EEDVEPQLDL SLRL
Functional Description ? help Back to Top
Source Description
UniProtMay function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895641e-102AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121708.14e-78PREDICTED: zinc finger protein KNUCKLES
SwissprotQ9FFX42e-51KNU_ARATH; Zinc finger protein KNUCKLES
TrEMBLM4CX401e-76M4CX40_BRARP; Uncharacterized protein
STRINGBra008787.1-P2e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-39C2H2 family protein
Publications ? help Back to Top
  1. Sun B, et al.
    Timing mechanism dependent on cell division is invoked by Polycomb eviction in plant stem cells.
    Science, 2014. 343(6170): p. 1248559
    [PMID:24482483]
  2. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]