PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789658
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 213aa    MW: 24339.6 Da    PI: 9.6367
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789658genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-33151411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgel 99 
                lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++ek+ yfFsk++++ ++ ++r + +  +gyWk  gk++++++  g++
  676789658  15 LPIGYRFHPTEQELILHYLLPKAYDSPLPS-SIIPVFDVFFSHPLTFPG--DQKEKQRYFFSKKRREVSSnEHRIKITSGDGYWKPIGKERDIIA-CGRN 110
                699*************************99.89***************4..4578899******9998861555555778***************.999* PP

        NAM 100 vglkktLvfy..kgrapkgektdWvmheyrl 128
                vg+++tL+fy  ++++++++kt+W m ey l
  676789658 111 VGIRRTLAFYetNKSSSNSNKTRWSMTEYCL 141
                **********5445677889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-3910160IPR003441NAC domain
PROSITE profilePS5100538.14115161IPR003441NAC domain
PfamPF023652.1E-1916141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEVEKRIMVN GGMRLPIGYR FHPTEQELIL HYLLPKAYDS PLPSSIIPVF DVFFSHPLTF  60
PGDQKEKQRY FFSKKRREVS SNEHRIKITS GDGYWKPIGK ERDIIACGRN VGIRRTLAFY  120
ETNKSSSNSN KTRWSMTEYC LAGFASAKVF GEWAVYNVYE RKAASKGRRQ RKSRGRDEEE  180
GLSCIHFTIE SDHETGPPPP SPPTSADESG SII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-181314113140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789658
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667600.0KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399904.11e-129NAC domain-containing protein 41
TrEMBLV4LG111e-128V4LG11_EUTSA; Uncharacterized protein
STRINGXP_006399904.11e-128(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-109NAC domain containing protein 84