PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789716
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 304aa    MW: 33539.2 Da    PI: 6.3692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789716genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183483356
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g+
  676789716 34 FRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
               8****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-333396IPR001471AP2/ERF domain
PROSITE profilePS5103220.353390IPR001471AP2/ERF domain
PfamPF008478.6E-143383IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-203389IPR016177DNA-binding domain
CDDcd000181.57E-273488No hitNo description
Gene3DG3DSA:3.30.730.101.7E-283489IPR001471AP2/ERF domain
PRINTSPR003672.5E-93445IPR001471AP2/ERF domain
PRINTSPR003672.5E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCAFRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQKQGV NRNLSFSGRE SGSWAYKLDT  120
AGGLDLGLGP SNGSRGAWSG SFSFLREDDH YNSNRCLSSS GSNISWLLPK RSDSQDQESI  180
NAESGCGGEG GGLTFSTKLK PKNVMIPPDY GSPNGVWSRY LVGQEKKTEY DVSSSCGSSD  240
NKESVSVPSS GGVEGMHRPE VEEGTGYLEM DELLEMDDLG LLIGKNGDFK NWCCDEFQHP  300
WNWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-143489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789716
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420608.11e-178PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_013608387.11e-178PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-168DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A078GG201e-177A0A078GG20_BRANA; BnaC09g39350D protein
TrEMBLA0A0D3EED91e-177A0A0D3EED9_BRAOL; Uncharacterized protein
STRINGBo9g155940.11e-177(Brassica oleracea)
STRINGXP_010420608.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-141ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]