PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789890
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 461aa    MW: 51850.8 Da    PI: 8.8741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789890genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-08170195127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC  f + GtC  G+ C+FaHg+
  676789890 170 YKTRLCAKFKA-GTCTNGEPCNFAHGM 195
                9**********.*************95 PP
2zf-CCCH21.83.2e-07252274325
                S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                ++lCr f  + +C+yG+rC+F+H
  676789890 252 MKLCRKFCLGEECPYGERCNFIH 274
                57999999966************ PP
3zf-CCCH37.34.6e-12346371127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt++C+ f + G+C+yGd+C++aHg+
  676789890 346 WKTRICMKFEK-GQCPYGDNCHYAHGQ 371
                8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.01E-7168200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-13168202IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4169195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352169196IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6170195IPR000571Zinc finger, CCCH-type
SMARTSM003560.0057249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671249277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6249275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-8251275IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4252274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-9343374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-14344374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079345372IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7345371IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-10346371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDRWASPTYF VLLSLQQFRN NNNINNKMKM KEREKEKGIY MKCSKTLNRV SSPKSAAAIV  60
DPVMDWSYSD PRPMFVQSPY GVWNQTQMID SMNNDKLELH SQSEPHSQSQ QQPPPLHQLQ  120
PLMKRPRLHE ENVFNQVSSF PPTSSNNNNA WMVPSSNAPP VNKGTAKIFY KTRLCAKFKA  180
GTCTNGEPCN FAHGMEDMRQ PPSNWQEIVG PPLQNRDRER ERERERERPS LVSVGNNSVV  240
NREDDQKIIL RMKLCRKFCL GEECPYGERC NFIHEDLSKF REDSGKLRES SAISVGTTVA  300
DSPSLDNGMA ASHQIEVNRQ GTIPVIVPPP MNNGGGGGGG VKTVYWKTRI CMKFEKGQCP  360
YGDNCHYAHG QAELLNSVGR VEVEAVHAVA SVSKQPVIPA NEAFAMKPTA QVTADSSGLN  420
DEVRRKKCLL KWSDSKKINR IYGDWIDDLP VGPKSTKPVE S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217227RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406508.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLE4MYC40.0E4MYC4_EUTHA; mRNA, clone: RTFL01-48-H16
TrEMBLV4NNA60.0V4NNA6_EUTSA; Uncharacterized protein
STRINGCagra.1211s0017.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-171C3H family protein