PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676790278
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 185aa    MW: 19102.8 Da    PI: 6.7716
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676790278genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof66.44.8e-219432761
     zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               +qPryfCk+CrryWt+GG+lr+vPvGgg+r++ ++
  676790278  9 HQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 43
               7*****************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088416.88142IPR003851Zinc finger, Dof-type
PfamPF027012.8E-17842IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-111037IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSTMQLHHHQ PRYFCKSCRR YWTQGGTLRD VPVGGGTRRS SSKRNRSFSS NVTTASSSSC  60
SSSVITTANG SEEPTNQGNV GNEAKGGNVI SGYRSFASLL SGQSDGAAFL ALGNGSGSGG  120
GLDYGFGYGY GFEEMSIGYL GGGSGGEVPV VGGGGDTWQI GEIEGKSGDS LWPGLEISMQ  180
SNDVK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676790278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-53CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16N31e-53AC007519.2 Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590549.12e-80PREDICTED: dof zinc finger protein DOF1.6
SwissprotQ9SX972e-45DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A0D3CNY44e-79A0A0D3CNY4_BRAOL; Uncharacterized protein
STRINGBo6g010470.16e-80(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.11e-14Dof family protein