PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676790314
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 120aa    MW: 13792.7 Da    PI: 10.4542
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676790314genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57350.74.9e-1663116355
     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlv 55 
                ++r+w+eeDe+++L Gl+d++aktg++ + ++d+f++f+  +si +k+sk+ql+
  676790314  63 INRIWNEEDELTVLNGLVDYQAKTGVERKTNWDEFHHFLGgGSIAVKFSKDQLL 116
                68************************************96369*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-1064116IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVNLRHLDFS DDFSPSSQSL FQRKSPWKHT SKPPPPSEPV LEQVTKKNKN KKKKNKKLAS  60
SVINRIWNEE DELTVLNGLV DYQAKTGVER KTNWDEFHHF LGGGSIAVKF SKDQLLSMKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676790314
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590206.12e-29PREDICTED: uncharacterized protein LOC106298614
SwissprotP0DKL01e-17STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2
TrEMBLA0A3N6RAV92e-28A0A3N6RAV9_BRACR; Uncharacterized protein
STRINGBo6g064770.11e-28(Brassica oleracea)
STRINGBo7g043690.12e-27(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.13e-18DNA-binding storekeeper protein-related transcriptional regulator