PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676790482
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 324aa    MW: 36343.6 Da    PI: 7.5436
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676790482genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.94.3e-15250274226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ktelC+ +++tG C+yG++C+FaHg
  676790482 250 KTELCNKWQETGACPYGNNCQFAHG 274
                9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-18243281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-11246280IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995248276IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-12250274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-8282317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-12282315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972286314IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5286313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKVMASTTV TDLACVTALN SPPPPLSPQS DKSNNNSNKQ HQEDFAASFA SLYNSIFSPE  60
SQFPSSLSFS PSPPSSSSPP RFDDTTTEHR LRQARLILEY DELNEHYELC ISRLQSLMTE  120
LDSLRQENDS LRQENVDLLK LIHISATTSS SSSSSSSSVS PPAVHNRHQI SDFVSQCRPA  180
RRTNPERNSL PKSISVRSPG YLKMMSQTSQ LSNFTSQLSS NSVTQKVSVP TKGEREAALE  240
LEVYRQGMTK TELCNKWQET GACPYGNNCQ FAHGIDELRP VIRHPRYKTE VCRMIVTGAT  300
CPYGHRCHFR HSLTDQERMM LLTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21250312567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676790482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-82AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-82CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105232.11e-159PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_018508597.11e-159PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N31e-133C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3P6BR871e-158A0A3P6BR87_BRACM; Uncharacterized protein
STRINGBra004189.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-124C3H family protein