PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676791068
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 165aa    MW: 18737.1 Da    PI: 6.0212
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676791068genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-101964550
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                + rr   NReA r++R++Kka+++ Le++vk L++ N+ L  +l+
  676791068 19 SNKRRSCGNREAVRKYREKKKARTAYLEDEVKRLQSMNEHLLRKLQ 64
               67899999*********************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-121182No hitNo description
SMARTSM003382.0E-81482IPR004827Basic-leucine zipper domain
PfamPF077167.0E-151565IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2321783IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.31E-81865No hitNo description
CDDcd146861.21E-92765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MDLFTLCQDP QENDHSDSSN KRRSCGNREA VRKYREKKKA RTAYLEDEVK RLQSMNEHLL  60
RKLQSQAMVE TEIIRLRTLL VEMQGKIDDE LGGLSFQEQC NGSGFVFKEG QMDPNTISIS  120
CNNTDGCNVA TRNAMCEVAS VECEEGKALH EPLHSFVPHS PPFSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676791068
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497117e-98AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBankCP0026867e-98CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513653.12e-85PREDICTED: basic leucine zipper 24-like
RefseqXP_018513654.12e-85PREDICTED: basic leucine zipper 24-like
RefseqXP_022573725.12e-85basic leucine zipper 24 isoform X1
RefseqXP_022573726.12e-85basic leucine zipper 24 isoform X1
RefseqXP_022573727.12e-85basic leucine zipper 24 isoform X1
SwissprotQ8GTS17e-75BZP24_ARATH; Basic leucine zipper 24
TrEMBLM4EXC72e-97M4EXC7_BRARP; Uncharacterized protein
STRINGBra033464.1-P4e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.24e-78basic leucine zipper 24