PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676791612
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 138aa    MW: 15889.3 Da    PI: 9.0899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676791612genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS81.61.4e-2531138149260
       GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                s     ke ++etg+rLa+++++ +vpfe+n+ +a+++e++++++L++k+gE ++Vn+ +  ++ lde+v ++s+rd++Lkl+++ +P+v++ +    ++
  676791612  31 S---LLKEGVQETGHRLARYCQKYKVPFEYNA-IARKWETIKVQDLKIKEGELVVVNSLFCFKNPLDETVMVNSPRDAILKLIRKANPNVFIQAVLSGSY 126
                3...47899***********************.7****************************************************************** PP

       GRAS 249 nsesFlerflea 260
                n++ F++rf ea
  676791612 127 NAPFFVTRFREA 138
                *********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.9541138IPR005202Transcription factor GRAS
PfamPF035144.9E-2331138IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
METYQEGLNN DPKNQELLDG VRRLEISASH SLLKEGVQET GHRLARYCQK YKVPFEYNAI  60
ARKWETIKVQ DLKIKEGELV VVNSLFCFKN PLDETVMVNS PRDAILKLIR KANPNVFIQA  120
VLSGSYNAPF FVTRFREA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676791612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110940.11e-57PREDICTED: scarecrow-like protein 14
RefseqXP_022546185.14e-58scarecrow-like protein 14
SwissprotQ9XE585e-55SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A078FR762e-56A0A078FR76_BRANA; BnaA08g29000D protein
TrEMBLA0A397YQS63e-56A0A397YQS6_BRACM; Uncharacterized protein
TrEMBLM4EPG83e-56M4EPG8_BRARP; Uncharacterized protein
STRINGBra030688.1-P5e-57(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-57SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]