PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676791648

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MIKC_MADS

Protein Properties

Length: 202aa MW: 23177 Da PI: 10.077

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676791648	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.7	3.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rqvtfskRr g++KKA+ELS+LCda+va iifs++g+ly+++s 676791648 9 KKIENTTSRQVTFSKRRSGLFKKAHELSILCDAQVAAIIFSQKGRLYDFAS 59 68***********************************************86 PP
2	K-box	68	3e-23	85	169	11	95
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 e+ + l++e+ + ++ie+L+ +R+l+G++L+s+s+keLq++ +q+eksl +RskK +l+ +++e+l+ ke+el++e +L 676791648 85 EQYVQGLKKEMVTMVQKIEMLEVHNRKLMGQGLGSCSVKELQEITTQIEKSLHIVRSKKAKLYGDEVEKLKVKERELKDERVRLY 169 56678999************999****************************************************998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.2E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.469	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.33E-31	3	84	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.83E-40	3	73	No hit	No description
PRINTS	PR00404	3.3E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-29	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	12.696	88	178	IPR002487	Transcription factor, K-box
Pfam	PF01486	5.6E-22	89	170	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MVRGKIEIKK IENTTSRQVT FSKRRSGLFK KAHELSILCD AQVAAIIFSQ KGRLYDFASS 60 DIQKTIKRYA EYKRECFVAE SHPIEQYVQG LKKEMVTMVQ KIEMLEVHNR KLMGQGLGSC 120 SVKELQEITT QIEKSLHIVR SKKAKLYGDE VEKLKVKERE LKDERVRLYG RVGERPMGMP 180 PGSKEKEDVE TDLVIGFPKS GP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_R	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
1tqe_S	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
5f28_A	1e-19	1	72	1	72	MEF2C
5f28_B	1e-19	1	72	1	72	MEF2C
5f28_C	1e-19	1	72	1	72	MEF2C
5f28_D	1e-19	1	72	1	72	MEF2C
6c9l_A	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_B	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_C	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_D	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_E	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
6c9l_F	1e-19	1	72	1	72	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269\|PubMed:21609362}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676791648

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ447061	0.0	DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107059.1	1e-131	PREDICTED: MADS-box protein AGL72 isoform X1
Refseq	XP_009107066.1	1e-131	PREDICTED: MADS-box protein AGL72 isoform X1
Refseq	XP_009107076.1	1e-131	PREDICTED: MADS-box protein AGL72 isoform X1
Refseq	XP_022575923.1	1e-131	MADS-box protein AGL72-like isoform X5
Swissprot	Q9FLH5	1e-120	AGL72_ARATH; MADS-box protein AGL72
TrEMBL	M4EHL7	1e-130	M4EHL7_BRARP; Uncharacterized protein
STRING	Bra028282.1-P	1e-130	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51860.2	1e-110	MIKC_MADS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]