PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676791654
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25300.4 Da    PI: 9.892
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676791654genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
  676791654  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLYEFSS 59
               68***********************************************96 PP
2K-box62.41.7e-21881711497
      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 ++l++e++ + k+i+ L+  qR+l+G++L+s+s+ eLq++  q+eksl+ +Rs+K el+ +q++ l++ke+el +e ++Lr+k
  676791654  88 LQELKKEMDIMVKKIDLLEVHQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYADQLRGLKQKERELLDERRRLREK 171
                6899******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-32378IPR002100Transcription factor, MADS-box
CDDcd002655.38E-42374No hitNo description
PRINTSPR004043.6E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.17188179IPR002487Transcription factor, K-box
PfamPF014861.3E-2089171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLYEFSSS  60
EMEKTIERYG KFSNEYFVPG RLQVELYLQE LKKEMDIMVK KIDLLEVHQR KLMGQGLGSC  120
SVAELQEIDI QIEKSLRIVR SRKAELYADQ LRGLKQKERE LLDERRRLRE KEIRERLLRP  180
VLPVTLHAEK GEPEGGCRTK HSTEVETDLF IGLPVARL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-19173173MEF2 CHIMERA
6byy_B4e-19173173MEF2 CHIMERA
6byy_C4e-19173173MEF2 CHIMERA
6byy_D4e-19173173MEF2 CHIMERA
6bz1_A4e-19173173MEF2 CHIMERA
6bz1_B4e-19173173MEF2 CHIMERA
6bz1_C4e-19173173MEF2 CHIMERA
6bz1_D4e-19173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676791654
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412201e-160AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454345.11e-140PREDICTED: MADS-box protein AGL71
RefseqXP_018454346.11e-140PREDICTED: MADS-box protein AGL71
RefseqXP_018454347.11e-140PREDICTED: MADS-box protein AGL71
SwissprotQ9LT931e-113AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A397XIY71e-130A0A397XIY7_BRACM; Uncharacterized protein
STRINGXP_006281070.11e-125(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-108AGAMOUS-like 71