PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676792476

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HSF

Protein Properties

Length: 154aa MW: 18149.9 Da PI: 9.6013

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676792476	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	51.9	2e-16	20	105	6	101
HHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 6 lyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 lyei++ ++++ +isws+ng+sf+v+dee f ++ + F +++f+ F L++ gFkkv++e+ e++h++F +gk el +++ +++ 676792476 20 LYEIVDRPSTDPIISWSQNGKSFIVWDEEAFCRNF-IHKFHQTKFHFFAYRLKVAGFKKVDSEH---------LEYAHDEFVRGKPELADEMDKRR 105 8******************************55.56799****************999.........78***********99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.8E-14	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.0E-19	19	97	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.1E-16	20	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.55E-16	20	102	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MVRLHGEHGS KARHYLAGIL YEIVDRPSTD PIISWSQNGK SFIVWDEEAF CRNFIHKFHQ 60 TKFHFFAYRL KVAGFKKVDS EHLEYAHDEF VRGKPELADE MDKRRMEFYD AKLKTFMATA 120 PTPPAELRKA FKLAMMEKRE REKAVAKDIT QLNL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676792476

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Bostr.30275s0431.1.p	2e-42	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM965	28	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18870.1	7e-25	HSF family protein