PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676792722

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 89aa MW: 10256 Da PI: 10.8573

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676792722	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.9	1.1e-32	21	71	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ 676792722 21 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 71 79***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-40	13	72	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.081	13	73	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.64E-39	14	72	No hit	No description
SuperFamily	SSF55455	6.54E-31	14	75	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	15	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-34	15	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-27	22	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-34	35	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.1E-34	50	71	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MELGGDSSPQ RKSGRGKIEI KRIENTTNRQ VTFCKRRNGL LKKAYELSVL CDAEVALIVF 60 SSRGRLYEYS NNRVTLRARI FTRLVFLLC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
1tqe_R	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
1tqe_S	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
6c9l_A	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	14	77	2	68	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676792722

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC984300	4e-92	KC984300.2 Brassica oleracea var. viridis AG mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468201.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Refseq	XP_018468202.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Refseq	XP_018468203.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_018468205.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_018468206.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X3
Refseq	XP_018468209.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Refseq	XP_018468210.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X1
Refseq	XP_018468211.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_018468212.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_018468213.1	3e-45	PREDICTED: floral homeotic protein AGAMOUS isoform X3
Swissprot	Q01540	2e-45	AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBL	A0A3N6RQT5	2e-44	A0A3N6RQT5_BRACR; Uncharacterized protein
STRING	XP_006414034.1	4e-45	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	6e-47	MIKC_MADS family protein