PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676793144
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 182aa    MW: 21582.1 Da    PI: 9.9861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676793144genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94.1e-16953145
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               krie    ++  fskR++g++KKAeE+ vLC+  v +++fs+t+k
  676793144  9 KRIECPKEKSSKFSKRKKGLFKKAEEMAVLCENAVILLVFSPTNK 53
               678888889999*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.077161IPR002100Transcription factor, MADS-box
CDDcd001201.45E-12260No hitNo description
SuperFamilySSF554557.59E-22283IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-151055IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRKKIELKR IECPKEKSSK FSKRKKGLFK KAEEMAVLCE NAVILLVFSP TNKPTFFYSP  60
SRQLNIILEK LYNMSEQERQ ERRAYTKKTL MKQLMKKNTE TANENQLLSS GSDEVFEVQK  120
LVEEDNKVIK LKEARESLDD NISILRDWQN PYRINDLERL KIMEDHLITT LNQIRKLKIQ  180
DE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676793144
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022563677.15e-70agamous-like MADS-box protein AGL65
TrEMBLA0A0D3DVC84e-75A0A0D3DVC8_BRAOL; Uncharacterized protein
STRINGBo8g098790.17e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.18e-17AGAMOUS-like 33