PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676794078
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 291aa    MW: 31964.4 Da    PI: 6.7041
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676794078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17214249134
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  676794078 214 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 249
                *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.2E-1168103IPR010399Tify domain
PROSITE profilePS5132014.20868103IPR010399Tify domain
PfamPF062001.3E-1073102IPR010399Tify domain
PfamPF062031.5E-15138180IPR010402CCT domain
PROSITE profilePS5101713.066138180IPR010402CCT domain
SMARTSM004011.6E-11208261IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.565208264IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-13211273No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15213255IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-15214249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
CDDcd002021.15E-14214256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDDGLHGNNG GMHNGGDENP HHPMHVQYEH HGLMDEHADD GMNEGLETDI PSHLGNTTDH  60
RGEVVDRGSD GGDQLTLSFQ GQVYVFDRVL PEKVQAVLLL LGGREVPQTL PTTLGSPHQN  120
NRVLGLSGTP QRFSAPQRQA SLLRFREKRK GRNFDKTIRY TVRKEVALRM QRKKGQFTSA  180
KSSNEDSAST GSDWGSSQNW GLEGSETQKP EALCRHCGTS EKSTPMMRRG PEGPRTLCNA  240
CGLMWANKGA LRDLSKAPPQ IAQNLPANKN DDSILEAEHM LEVAGDISNS Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676794078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0851090.0AY085109.1 Arabidopsis thaliana clone 12996 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638693.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_013693129.10.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL71e-171GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3N6RG160.0A0A3N6RG16_BRACR; Uncharacterized protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-169ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]