PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676794296
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 162aa    MW: 19030.2 Da    PI: 9.2002
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676794296genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.62.4e-1271124558
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                +++r+k++NRe+ArrsR RK+ ++eeL   v  L +eN++L  +l++  +  +k
  676794296  71 RKQRKKISNRESARRSRMRKQRQLEELWSQVIRLRNENHQLLRKLNRVLESNEK 124
                689******************************************998777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-966125No hitNo description
SMARTSM003383.9E-1367131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.79569132IPR004827Basic-leucine zipper domain
PfamPF001701.0E-971124IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-1071121No hitNo description
CDDcd147021.43E-1672120No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQPSTNIFSL HGCPPSYLSQ FPTTSPFRVS GQNHNPYYSF PTSVNPSQFM NSNNSTSDEA  60
EENQRDVMNE RKQRKKISNR ESARRSRMRK QRQLEELWSQ VIRLRNENHQ LLRKLNRVLE  120
SNEKVIEENG QLKDETSELK QMISDMQLQN QTPLSCLRDD TV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00533DAPTransfer from AT5G38800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676794296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405699.24e-90LOW QUALITY PROTEIN: basic leucine zipper 43
SwissprotQ9FMC21e-87BZP43_ARATH; Basic leucine zipper 43
TrEMBLV4LX906e-90V4LX90_EUTSA; Uncharacterized protein
STRINGXP_006405699.11e-90(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.16e-90basic leucine-zipper 43
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]