PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678290611
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 863aa    MW: 94364 Da    PI: 8.0871
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678290611genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182381357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  678290611 23 KYVRYTPEQVEALERVYAECPKPTSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
               6789*****************************************************97 PP
2START148.27.4e-471703772204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+ ++g a+ra+g+v  ++   v+++l+d++ W  +++  +++ +i++g  g l+l++++ +
  678290611 170 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRDSKGVAARACGLVSLEPR-KVADILKDRLSWLVDCRCHDVTSTINTGngGMLELIYMQVY 268
                68999*******************************99999*****************.9999999999******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+ +l +g+ v++++S++s +  p+   ++ +vRae+lpSg+l +p+++g s +++v+h+d ++ +++++lr+l++s+ + ++k+
  678290611 269 APTTLASaRDFWTLRYTTSLDDGSVVVCERSLTSSTGGPNgpsNACFVRAEMLPSGFLARPCEGGSSIIHIVDHIDFDATIVPEVLRPLYESSKILAQKM 368
                *************************************999998999****************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                ++a+l++ +
  678290611 369 TMAALRHVR 377
                *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6451882IPR001356Homeobox domain
SMARTSM003894.9E-162086IPR001356Homeobox domain
SuperFamilySSF466893.17E-162384IPR009057Homeodomain-like
CDDcd000866.51E-172383No hitNo description
PfamPF000463.6E-162381IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182581IPR009057Homeodomain-like
CDDcd146863.90E-675114No hitNo description
PROSITE profilePS5084823.182160388IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-17168374IPR023393START-like domain
SMARTSM002345.0E-41169379IPR002913START domain
SuperFamilySSF559612.88E-32170381No hitNo description
PfamPF018524.1E-44170377IPR002913START domain
PfamPF086702.5E-35659783IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MALSMHRESI NVSSKQQAAM DSKYVRYTPE QVEALERVYA ECPKPTSMRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKESSRLQS VNRKLSAMNK LLMEENDRLQ KQVSQLVYQN  120
GYMRQHLHGV STATTDTSCD SVVMSRHQQQ NPTHQHPQRD ANSPAGLLAI AEETLAEFLG  180
KATGTAVDWV QMIGMKPGPD SIGIVAVSRD SKGVAARACG LVSLEPRKVA DILKDRLSWL  240
VDCRCHDVTS TINTGNGGML ELIYMQVYAP TTLASARDFW TLRYTTSLDD GSVVVCERSL  300
TSSTGGPNGP SNACFVRAEM LPSGFLARPC EGGSSIIHIV DHIDFDATIV PEVLRPLYES  360
SKILAQKMTM AALRHVRQVA QETNSENPRN GGHQPAVLRA LSHKLCRGFN DAINGFANDG  420
WSIMSNDGVE DVTIAINNSP SSFLGTHFSS MSMLPAGSGV LCSRASMLLQ NVTPALLVRF  480
LREHRSEWAD YGIDMYCAAS LKHTPHTVPC LKTGGFPSSQ VILPLSQSIE NEECLDVVRL  540
AAHSFSPEDV AMPRDVYLLQ NDPAAARTLD LASALEVGQG APRPAGQIES SSLNLRSVLT  600
IAFQFVFENH NRDSVAVMAR QYVRNIVGCV QRVAMAIAPS PLSSDPMPKH VPCSPAAVTL  660
SRWICGSFRM HTGTELVPGE SLAGDGVLKS LWQHGDAIVC CSVRMNASAV FTFANQAGLD  720
MLETTVAMLQ DITLEKVLDD NGRKLLVAEF PKIMQQGFAY LPGGVCLSSM GRPVSYEQGV  780
VWKGPILYAL KAQVNGTEEG HGEGTKINLY KDGRHGKAWG LAFKNGLPAA DAPKKISGVH  840
KRCWKYIPKT QVTAPPANDP ATV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678290611
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096678.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLS8D0Z30.0S8D0Z3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]