PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678291569
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 93aa    MW: 10800.3 Da    PI: 10.0098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678291569genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-081154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+    +++  a +++ ++   +W+ Iar++  g+++++++ ++
        678291569 11 SWSVMQNKQFEAALAKFDKEtpdRWHNIAREVA-GKSPEEVRRHY 54
                     7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-8860IPR001005SANT/Myb domain
SuperFamilySSF466894.29E-111065IPR009057Homeodomain-like
PfamPF002491.4E-51154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-51162IPR009057Homeodomain-like
CDDcd001671.19E-51857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASSSMSSSR SWSVMQNKQF EAALAKFDKE TPDRWHNIAR EVAGKSPEEV RRHYEALEKD  60
IMRIETDQVP IPNYHSLPKV GIEQRFVKGL RLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-26376275RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678291569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.14e-39protein RADIALIS-like 3
SwissprotQ1A1732e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9H6D01e-34A0A2G9H6D0_9LAMI; Uncharacterized protein
STRINGMigut.N00487.1.p7e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-26RAD-like 6