PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678292832

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 168aa MW: 18369.3 Da PI: 4.9777

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678292832	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H 678292832 47 FTCKYCPREFTTSQALGGHQNAH 69 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.0E-6	45	74	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-4	45	73	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-5	47	71	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.552	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MPLRLTSDQN RAMEPGEPTH SVDSAQSNVV DEGTAAARGE SSDVKIFTCK YCPREFTTSQ 60 ALGGHQNAHK QERAMDKNPH VSTTSSVIYF PRVVPGAATP MFRQDWVNAQ DHVAVPATYR 120 YHLPSFYWAT PPLPVGGSTD PPSPTPVQES MDGEEGKEGE DIDLTLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678292832

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13342	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	6e-14	C2H2 family protein